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CXXC5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.1 nTPM
HPA:65.1 nTPM
GTEx:48.8 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:35.6 nTPM
Mouse:39.9 nTPM
Allen mouse:1.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.4
2019 Male, age 18, unknown 76.3
2586 Male, age 75, left hemisphere 75.9
1830 Male, age 51, unknown 59.2
2411 Female, age 72, unknown 57.6
2828 Female, age 72, unknown 57.5
1827 Male, age 72, unknown 54.4
1870 Female, age 42, unknown 52.3
1833 Male, age 53, unknown 51.1
2219 Male, age 76, both hemispheres 50.7
2666 Male, age 74, left hemisphere 49.5
Dorsal raphe nucleus
nTPM: 46.9
2750 Male, age 76, both hemispheres 63.7
2016 Female, age 72, unknown 49.7
1828 Male, age 53, unknown 45.7
2047 Male, age 72, unknown 38.5
2298 Female, age 72, unknown 37.1
Inferior colliculus
nTPM: 42.8
1890 Male, age 53, unknown 52.1
2097 Female, age 72, unknown 45.5
1848 Female, age 42, unknown 37.3
2849 Male, age 72, unknown 36.3
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Pedunculopontine tegmental nucleus
nTPM: 52.8
2338 Male, age 61, both hemispheres 58.2
2334 Male, age 80, both hemispheres 51.0
1921 Female, age 85, both hemispheres 49.3
Periaquaductal grey, anterior
nTPM: 45.5
2502 Female, age 75, unknown 52.5
1795 Male, age 51, unknown 48.5
1947 Male, age 18, unknown 35.4
Periaquaductal grey, dorsal
nTPM: 44.6
1831 Male, age 72, unknown 63.8
2850 Male, age 76, both hemispheres 44.8
2464 Female, age 72, unknown 39.1
1840 Male, age 53, unknown 30.5
Periaquaductal grey, lateral
nTPM: 53.1
2272 Male, age 74, both hemispheres 54.5
2140 Male, age 76, both hemispheres 53.0
2053 Male, age 18, unknown 51.7
Pretectal area
nTPM: 52.3
2316 Male, age 76, right hemisphere 64.3
2273 Male, age 74, both hemispheres 64.1
2407 Male, age 75, both hemispheres 59.9
2007 Male, age 72, unknown 59.1
1815 Male, age 53, unknown 54.8
2667 Female, age 75, unknown 52.5
1817 Female, age 42, unknown 51.8
2825 Male, age 18, unknown 44.5
1816 Male, age 51, unknown 44.3
1944 Female, age 72, unknown 41.9
2224 Female, age 72, unknown 38.3
Red nucleus
nTPM: 65.1
2785 Male, age 18, unknown 80.9
2823 Male, age 76, right hemisphere 76.2
2584 Male, age 75, left hemisphere 73.4
1904 Male, age 53, unknown 69.0
1865 Male, age 51, unknown 66.1
2769 Male, age 72, unknown 63.1
2588 Male, age 74, left hemisphere 62.2
2227 Male, age 72, unknown 61.6
1954 Female, age 42, unknown 59.2
2503 Female, age 72, unknown 57.7
1821 Female, age 72, unknown 57.0
2725 Female, age 75, unknown 54.6
Substantia nigra
nTPM: 42.2
2583 Male, age 75, right hemisphere 67.6
1941 Male, age 53, unknown 48.8
1889 Female, age 72, unknown 47.3
1851 Male, age 51, unknown 45.2
2590 Female, age 75, unknown 44.1
2699 Male, age 18, unknown 41.0
2409 Female, age 72, unknown 37.1
1916 Female, age 42, unknown 30.5
2665 Male, age 74, both hemispheres 30.2
2241 Male, age 72, unknown 29.9
Superior colliculus
nTPM: 52.7
1913 Female, age 42, unknown 66.0
1995 Male, age 72, unknown 65.8
1796 Male, age 53, unknown 52.7
2587 Male, age 74, left hemisphere 52.3
2664 Male, age 75, both hemispheres 51.9
2668 Female, age 75, unknown 49.2
1839 Male, age 51, unknown 49.1
1895 Male, age 76, right hemisphere 47.1
2261 Male, age 18, unknown 46.4
2087 Female, age 72, unknown 46.1
Ventral tegmental area
nTPM: 46.2
2223 Female, age 72, unknown 57.5
1942 Male, age 51, unknown 46.2
2218 Male, age 76, both hemispheres 45.5
2410 Female, age 72, unknown 44.2
2021 Male, age 53, unknown 44.1
1915 Female, age 42, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.8
Samples: 139

Max nTPM: 121.5
Min nTPM: 24.6
Std nTPM: 14.0
Median nTPM: 46.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 121.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 92.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 91.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 80.2
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 76.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 75.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 73.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 70.9
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 69.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 69.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 125.7
FF:10158-103A5 76 years, female 125.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 35.6
Pig sample Sample description nTPM
Midbrain
nTPM: 35.6
Samples: 4

Max nTPM: 57.6
Min nTPM: 24.7
Sample A Female 57.6
Sample B Female 24.7
Sample C Male 30.4
Sample D Male 29.5
Periaqueductal gray
nTPM: 24.5
Samples: 3

Max nTPM: 25.3
Min nTPM: 24.0
Sample B Female 24.0
Sample C Male 24.2
Sample D Male 25.3
Substantia nigra
nTPM: 30.9
Samples: 4

Max nTPM: 37.7
Min nTPM: 25.6
Sample A Female 33.7
Sample B Female 25.6
Sample C Male 26.7
Sample D Male 37.7
Superior colliculi
nTPM: 31.4
Samples: 4

Max nTPM: 37.0
Min nTPM: 21.9
Sample A Female 37.0
Sample B Female 21.9
Sample C Male 33.3
Sample D Male 33.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 39.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.9
Samples: 4

Max nTPM: 42.4
Min nTPM: 37.5
Sample A Male 42.4
Sample B Male 38.6
Sample C Female 37.5
Sample D Female 41.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.6
69080510 Antisense, RP_050324_02_B11, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

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