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SPSB1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.4 nTPM
HPA:9.4 nTPM
GTEx:8.8 nTPM
FANTOM5:32.7 Scaled Tags Per Million
Pig:4.0 nTPM
Mouse:14.1 nTPM
Allen mouse:0.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 9.4
Sample id Sample description nTPM
Hippocampus
nTPM: 7.3
1855 Male, age 76, left hemisphere 7.9
2148 Female, age 91, left hemisphere 7.9
1898 Male, age 80, left hemisphere 7.3
1911 Female, age 85, right hemisphere 6.9
2529 Female, age 94, left hemisphere 6.9
2621 Female, age 67, right hemisphere 6.8
Dentate gyrus
nTPM: 8.6
2010 Male, age 76, both hemispheres 14.1
2530 Female, age 94, left hemisphere 10.5
2531 Female, age 67, both hemispheres 7.2
2528 Male, age 74, both hemispheres 7.0
2246 Female, age 85, both hemispheres 6.6
1927 Female, age 91, both hemispheres 6.2
Entorhinal gyrus
nTPM: 7.3
2117 Female, age 91, right hemisphere 10.3
2764 Male, age 80, right hemisphere 8.7
2686 Male, age 75, right hemisphere 6.6
1787 Male, age 76, left hemisphere 6.2
2613 Female, age 94, left hemisphere 6.1
1938 Female, age 85, left hemisphere 6.0
Hippocampus, CA1
nTPM: 8.3
2045 Male, age 76, both hemispheres 11.8
2082 Female, age 91, right hemisphere 8.7
2749 Male, age 80, left hemisphere 7.5
1873 Female, age 85, both hemispheres 7.2
2527 Male, age 74, both hemispheres 6.5
Hippocampus, CA2
nTPM: 7.4
2249 Male, age 74, both hemispheres 8.5
1963 Male, age 80, left hemisphere 8.0
2113 Female, age 91, right hemisphere 7.8
2437 Female, age 94, left hemisphere 7.5
1940 Female, age 85, left hemisphere 6.4
1892 Male, age 76, both hemispheres 6.2
Hippocampus, CA3
nTPM: 7.7
1867 Male, age 76, both hemispheres 11.5
2137 Male, age 80, left hemisphere 8.5
1891 Female, age 85, both hemispheres 7.4
2620 Female, age 94, left hemisphere 7.3
2436 Male, age 74, both hemispheres 5.8
2861 Female, age 67, both hemispheres 5.7
Parahippocampal cortex
nTPM: 6.9
2018 Male, age 76, both hemispheres 13.7
2692 Male, age 74, both hemispheres 7.8
2532 Female, age 72, left hemisphere 7.4
1990 Female, age 91, right hemisphere 7.2
1850 Male, age 80, both hemispheres 6.6
2245 Female, age 91, both hemispheres 6.1
1933 Female, age 85, both hemispheres 5.8
2693 Female, age 94, both hemispheres 5.0
2250 Female, age 67, right hemisphere 4.9
2622 Female, age 67, right hemisphere 4.5
Perirhinal gyrus
nTPM: 4.9
2521 Female, age 94, right hemisphere 6.1
2848 Male, age 76, right hemisphere 4.9
1841 Female, age 85, right hemisphere 4.7
1847 Female, age 91, left hemisphere 4.5
1794 Male, age 80, right hemisphere 4.3
Subiculum
nTPM: 9.4
2042 Male, age 76, both hemispheres 13.8
1901 Male, age 80, both hemispheres 11.8
2438 Female, age 94, left hemisphere 8.6
2729 Female, age 91, right hemisphere 7.5
1977 Female, age 85, both hemispheres 7.3
2619 Male, age 74, both hemispheres 7.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 8.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.8
Samples: 197

Max nTPM: 36.7
Min nTPM: 1.7
Std nTPM: 5.6
Median nTPM: 7.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 36.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 35.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 34.2
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 25.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 23.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 23.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 23.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 23.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 21.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 19.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 18.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 32.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.7
FF:10169-103B7 60 years, female 41.8
FF:10153-102I9 76 years, female 23.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 4.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 4.0
Samples: 4

Max nTPM: 5.2
Min nTPM: 2.4
Sample A Female 5.2
Sample B Female 3.3
Sample C Male 5.1
Sample D Male 2.4
Entorhinal cortex
nTPM: 2.1
Samples: 4

Max nTPM: 2.5
Min nTPM: 1.6
Sample A Female 1.9
Sample B Female 2.5
Sample C Male 1.6
Sample D Male 2.2
Subiculum
nTPM: 2.7
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.3
Sample A Female 2.5
Sample B Female 3.3
Sample C Male 2.3
Sample D Male 2.7
Ventral hippocampus
nTPM: 3.9
Samples: 4

Max nTPM: 4.6
Min nTPM: 2.6
Sample A Female 4.2
Sample B Female 2.6
Sample C Male 4.1
Sample D Male 4.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 14.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 10.5
Samples: 4

Max nTPM: 12.2
Min nTPM: 6.6
Sample A Male 12.0
Sample B Male 11.3
Sample C Female 12.2
Sample D Female 6.6
Hippocampal formation
nTPM: 14.1
Samples: 4

Max nTPM: 19.1
Min nTPM: 9.0
Sample A Male 9.0
Sample B Male 14.5
Sample C Female 19.1
Sample D Female 13.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.6
71380507 Antisense, RP_050414_02_F11, Mouse strain C57BL/6J (56 days, male) 1.0
77332092 Antisense, RP_070116_02_A07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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