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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.5 nTPM
HPA:8.5 nTPM
GTEx:29.5 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:7.6 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 0.4
2586 Male, age 75, left hemisphere 3.4
2666 Male, age 74, left hemisphere 1.1
1827 Male, age 72, unknown 0.0
1830 Male, age 51, unknown 0.0
1833 Male, age 53, unknown 0.0
1870 Female, age 42, unknown 0.0
2019 Male, age 18, unknown 0.0
2219 Male, age 76, both hemispheres 0.0
2411 Female, age 72, unknown 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 0.0
1828 Male, age 53, unknown 0.0
2016 Female, age 72, unknown 0.0
2047 Male, age 72, unknown 0.0
2298 Female, age 72, unknown 0.0
2750 Male, age 76, both hemispheres 0.0
Inferior colliculus
nTPM: 0.0
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
2849 Male, age 72, unknown 0.0
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 0.0
1921 Female, age 85, both hemispheres 0.0
2334 Male, age 80, both hemispheres 0.0
2338 Male, age 61, both hemispheres 0.0
Periaquaductal grey, anterior
nTPM: 3.2
1795 Male, age 51, unknown 7.7
2502 Female, age 75, unknown 2.1
1947 Male, age 18, unknown 0.0
Periaquaductal grey, dorsal
nTPM: 0.0
1831 Male, age 72, unknown 0.0
1840 Male, age 53, unknown 0.0
2464 Female, age 72, unknown 0.0
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 0.1
2272 Male, age 74, both hemispheres 0.4
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 4.8
1816 Male, age 51, unknown 31.0
1944 Female, age 72, unknown 10.5
1817 Female, age 42, unknown 5.1
1815 Male, age 53, unknown 3.8
2007 Male, age 72, unknown 3.1
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
2825 Male, age 18, unknown 0.0
Red nucleus
nTPM: 0.0
2584 Male, age 75, left hemisphere 0.7
1821 Female, age 72, unknown 0.0
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2588 Male, age 74, left hemisphere 0.0
2725 Female, age 75, unknown 0.0
2769 Male, age 72, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 8.5
2665 Male, age 74, both hemispheres 30.6
2583 Male, age 75, right hemisphere 28.7
2590 Female, age 75, unknown 24.0
1941 Male, age 53, unknown 1.6
1916 Female, age 42, unknown 0.5
1851 Male, age 51, unknown 0.0
1889 Female, age 72, unknown 0.0
2241 Male, age 72, unknown 0.0
2409 Female, age 72, unknown 0.0
2699 Male, age 18, unknown 0.0
Superior colliculus
nTPM: 1.2
2664 Male, age 75, both hemispheres 4.2
1796 Male, age 53, unknown 4.0
2087 Female, age 72, unknown 3.9
1839 Male, age 51, unknown 0.0
1895 Male, age 76, right hemisphere 0.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2261 Male, age 18, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2668 Female, age 75, unknown 0.0
Ventral tegmental area
nTPM: 0.6
2223 Female, age 72, unknown 3.9
1915 Female, age 42, unknown 0.0
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0
2218 Male, age 76, both hemispheres 0.0
2410 Female, age 72, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 29.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 29.5
Samples: 139

Max nTPM: 63.7
Min nTPM: 7.1
Std nTPM: 11.3
Median nTPM: 28.1
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 63.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 58.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 56.7
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 55.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 51.5
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 51.0
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 51.0
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 50.9
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 49.8
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 48.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.6
Pig sample Sample description nTPM
Midbrain
nTPM: 26.7
Samples: 4

Max nTPM: 37.7
Min nTPM: 13.1
Sample A Female 13.1
Sample B Female 18.6
Sample C Male 37.2
Sample D Male 37.7
Periaqueductal gray
nTPM: 18.1
Samples: 3

Max nTPM: 22.5
Min nTPM: 13.6
Sample B Female 18.2
Sample C Male 22.5
Sample D Male 13.6
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 29.3
Min nTPM: 11.5
Sample A Female 22.1
Sample B Female 24.8
Sample C Male 29.3
Sample D Male 11.5
Superior colliculi
nTPM: 22.1
Samples: 4

Max nTPM: 26.4
Min nTPM: 15.1
Sample A Female 26.4
Sample B Female 15.1
Sample C Male 21.0
Sample D Male 25.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 7.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 7.6
Samples: 4

Max nTPM: 8.3
Min nTPM: 7.1
Sample A Male 7.1
Sample B Male 7.3
Sample C Female 8.3
Sample D Female 7.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
73573223 Antisense, RP_051121_03_E06, Mouse strain C57BL/6J (56 days, male) 2.4
74640881 Antisense, RP_051121_03_E06, Mouse strain C57BL/6J (56 days, male) 1.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.