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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:41.4 nTPM
FANTOM5:70.8 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:43.7 nTPM
Allen mouse:4.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.8
1857 Female, age 85, left hemisphere 42.0
1854 Male, age 80, left hemisphere 41.3
1781 Male, age 74, unknown 39.5
2290 Female, age 72, unknown 38.4
2288 Male, age 75, left hemisphere 38.1
2289 Male, age 61, right hemisphere 37.6
2846 Female, age 79, unknown 37.3
2481 Female, age 94, left hemisphere 36.0
Claustrum
nTPM: 36.2
2568 Male, age 61, both hemispheres 39.0
2491 Male, age 75, both hemispheres 37.6
2198 Male, age 80, both hemispheres 36.8
2284 Female, age 91, both hemispheres 35.9
2292 Female, age 85, both hemispheres 35.9
2645 Female, age 72, unknown 35.8
2196 Female, age 79, unknown 35.4
2392 Female, age 94, both hemispheres 35.3
1956 Male, age 74, unknown 34.1
Globus pallidus, externus
nTPM: 39.5
2646 Male, age 61, right hemisphere 43.8
2772 Female, age 79, unknown 39.0
1996 Male, age 80, right hemisphere 38.8
2567 Female, age 72, unknown 38.2
2395 Male, age 75, both hemispheres 37.8
Globus pallidus, internus
nTPM: 37.8
2483 Female, age 94, right hemisphere 40.2
1818 Male, age 74, unknown 38.5
2566 Female, age 72, unknown 37.9
2037 Male, age 80, right hemisphere 37.6
2778 Female, age 91, both hemispheres 37.1
2111 Female, age 85, right hemisphere 36.5
2287 Male, age 75, right hemisphere 36.5
Nucleus accumbens
nTPM: 38.8
2824 Male, age 61, right hemisphere 41.4
2286 Male, age 75, left hemisphere 40.6
1856 Female, age 91, right hemisphere 39.8
1783 Male, age 74, unknown 39.7
1806 Female, age 85, left hemisphere 39.4
2732 Male, age 80, right hemisphere 37.2
2698 Female, age 72, unknown 37.0
2391 Female, age 94, left hemisphere 35.6
Nucleus basalis of Meynert
nTPM: 39.3
2569 Male, age 61, both hemispheres 43.7
2393 Male, age 80, right hemisphere 38.4
2484 Female, age 94, left hemisphere 38.4
2821 Male, age 75, both hemispheres 36.6
Nucleus of the diagonal band
nTPM: 37.8
2029 Male, age 61, right hemisphere 39.9
1979 Male, age 74, unknown 37.8
2775 Male, age 80, right hemisphere 37.6
2195 Female, age 85, both hemispheres 37.1
1812 Female, age 91, both hemispheres 36.4
Olfactory tubercle
nTPM: 38.5
1846 Male, age 80, right hemisphere 39.8
2856 Male, age 75, right hemisphere 39.0
1998 Female, age 91, both hemispheres 38.0
2487 Female, age 94, left hemisphere 37.2
Putamen
nTPM: 38.9
2647 Male, age 75, left hemisphere 42.2
1838 Male, age 80, right hemisphere 40.1
2466 Female, age 79, unknown 38.8
1937 Female, age 91, right hemisphere 38.6
2489 Female, age 72, unknown 38.0
1829 Male, age 74, unknown 37.6
2482 Female, age 94, left hemisphere 37.2
Septal nuclei
nTPM: 36.8
2031 Female, age 72, unknown 38.9
2394 Male, age 61, left hemisphere 38.0
2059 Female, age 85, both hemispheres 37.7
2199 Male, age 80, right hemisphere 36.5
1960 Male, age 74, unknown 35.6
2009 Female, age 91, both hemispheres 35.5
2629 Female, age 94, right hemisphere 35.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.1
Samples: 246

Max nTPM: 67.5
Min nTPM: 21.6
Std nTPM: 7.3
Median nTPM: 37.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 67.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 64.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 58.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 57.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 57.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 55.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 53.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 52.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 52.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 52.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 52.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 38.0
Samples: 246

Max nTPM: 120.7
Min nTPM: 24.2
Std nTPM: 9.1
Median nTPM: 36.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 120.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 74.3
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 62.9
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 62.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 61.4
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 59.5
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 57.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 56.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 55.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 55.1
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 54.0
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Brain - Putamen (basal ganglia)
Average nTPM: 41.4
Samples: 205

Max nTPM: 77.6
Min nTPM: 26.2
Std nTPM: 8.7
Median nTPM: 39.4
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 77.6
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 71.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 70.0
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 68.1
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 66.0
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 65.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 65.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 59.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 59.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 58.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 58.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 70.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.8
FF:10164-103B2 76 years, female 70.8
Globus pallidus
Scaled Tags Per Million: 40.9
FF:10161-103A8 76 years, female 47.1
FF:10175-103C4 60 years, female 34.7
Nucleus accumbens
Scaled Tags Per Million: 45.1
FF:10037-101F1 23-56 years, mixed 45.1
Putamen
Scaled Tags Per Million: 50.2
FF:10176-103C5 60 years, female 50.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Caudate
nTPM: 22.8
Samples: 4

Max nTPM: 27.5
Min nTPM: 19.8
Sample A Female 20.6
Sample B Female 23.1
Sample C Male 27.5
Sample D Male 19.8
Putamen
nTPM: 22.5
Samples: 4

Max nTPM: 28.0
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 19.6
Sample C Male 28.0
Sample D Male 24.0
Septum
nTPM: 20.3
Samples: 4

Max nTPM: 21.1
Min nTPM: 19.6
Sample A Female 21.1
Sample B Female 20.7
Sample C Male 19.6
Sample D Male 19.6
Ventral pallidum
nTPM: 20.0
Samples: 4

Max nTPM: 24.3
Min nTPM: 16.6
Sample A Female 16.6
Sample B Female 24.3
Sample C Male 20.5
Sample D Male 18.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 43.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.4
Samples: 4

Max nTPM: 42.7
Min nTPM: 39.8
Sample A Male 42.3
Sample B Male 42.7
Sample C Female 39.8
Sample D Female 40.7
Septum
nTPM: 43.8
Samples: 4

Max nTPM: 44.5
Min nTPM: 42.9
Sample A Male 44.2
Sample B Male 43.4
Sample C Female 42.9
Sample D Female 44.5
Ventral forebrain
nTPM: 41.9
Samples: 4

Max nTPM: 45.9
Min nTPM: 39.0
Sample A Male 45.9
Sample B Male 41.8
Sample C Female 39.0
Sample D Female 40.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.2
68745492 Antisense, RP_050210_02_A10, Mouse strain C57BL/6J (56 days, male) 4.2
Pallidum
Expression energy: 4.5
68745492 Antisense, RP_050210_02_A10, Mouse strain C57BL/6J (56 days, male) 4.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.