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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.6 nTPM
HPA:38.6 nTPM
GTEx:38.4 nTPM
FANTOM5:51.5 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:37.7 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.7
2586 Male, age 75, left hemisphere 42.2
2666 Male, age 74, left hemisphere 41.1
2828 Female, age 72, unknown 40.1
2019 Male, age 18, unknown 38.1
1870 Female, age 42, unknown 37.2
1827 Male, age 72, unknown 36.2
1830 Male, age 51, unknown 35.7
1833 Male, age 53, unknown 35.7
2411 Female, age 72, unknown 35.6
2219 Male, age 76, both hemispheres 35.2
Dorsal raphe nucleus
nTPM: 37.3
2016 Female, age 72, unknown 39.5
2047 Male, age 72, unknown 39.0
1828 Male, age 53, unknown 37.5
2298 Female, age 72, unknown 36.2
2750 Male, age 76, both hemispheres 34.1
Inferior colliculus
nTPM: 37.7
1890 Male, age 53, unknown 38.9
2849 Male, age 72, unknown 37.8
1848 Female, age 42, unknown 37.6
2097 Female, age 72, unknown 36.6
Median raphe nucleus
nTPM: 36.4
2220 Male, age 76, midline 36.4
Pedunculopontine tegmental nucleus
nTPM: 34.8
2334 Male, age 80, both hemispheres 35.4
2338 Male, age 61, both hemispheres 34.9
1921 Female, age 85, both hemispheres 34.2
Periaquaductal grey, anterior
nTPM: 37.8
1947 Male, age 18, unknown 38.4
2502 Female, age 75, unknown 37.9
1795 Male, age 51, unknown 37.1
Periaquaductal grey, dorsal
nTPM: 38.6
1831 Male, age 72, unknown 40.3
1840 Male, age 53, unknown 39.5
2850 Male, age 76, both hemispheres 37.9
2464 Female, age 72, unknown 36.9
Periaquaductal grey, lateral
nTPM: 36.7
2053 Male, age 18, unknown 38.6
2140 Male, age 76, both hemispheres 37.6
2272 Male, age 74, both hemispheres 33.8
Pretectal area
nTPM: 37.6
1944 Female, age 72, unknown 39.2
2407 Male, age 75, both hemispheres 39.2
1817 Female, age 42, unknown 38.6
2667 Female, age 75, unknown 38.6
1816 Male, age 51, unknown 37.7
1815 Male, age 53, unknown 37.4
2007 Male, age 72, unknown 37.0
2273 Male, age 74, both hemispheres 36.9
2825 Male, age 18, unknown 36.6
2224 Female, age 72, unknown 36.2
2316 Male, age 76, right hemisphere 36.1
Red nucleus
nTPM: 37.8
2584 Male, age 75, left hemisphere 39.3
1821 Female, age 72, unknown 38.9
1954 Female, age 42, unknown 38.9
2503 Female, age 72, unknown 38.8
2588 Male, age 74, left hemisphere 38.2
2227 Male, age 72, unknown 38.0
2769 Male, age 72, unknown 38.0
1865 Male, age 51, unknown 37.6
1904 Male, age 53, unknown 37.4
2725 Female, age 75, unknown 37.2
2785 Male, age 18, unknown 35.7
2823 Male, age 76, right hemisphere 35.4
Substantia nigra
nTPM: 37.7
2583 Male, age 75, right hemisphere 40.3
2665 Male, age 74, both hemispheres 40.1
1851 Male, age 51, unknown 39.6
2699 Male, age 18, unknown 39.5
1941 Male, age 53, unknown 37.2
1889 Female, age 72, unknown 36.5
2590 Female, age 75, unknown 36.5
1916 Female, age 42, unknown 36.2
2409 Female, age 72, unknown 36.1
2241 Male, age 72, unknown 34.7
Superior colliculus
nTPM: 37.6
2664 Male, age 75, both hemispheres 42.1
1995 Male, age 72, unknown 38.7
1796 Male, age 53, unknown 38.6
2668 Female, age 75, unknown 38.0
1913 Female, age 42, unknown 37.8
1895 Male, age 76, right hemisphere 36.8
2587 Male, age 74, left hemisphere 36.8
1839 Male, age 51, unknown 36.6
2261 Male, age 18, unknown 35.8
2087 Female, age 72, unknown 35.1
Ventral tegmental area
nTPM: 37.6
1942 Male, age 51, unknown 39.3
2410 Female, age 72, unknown 38.7
1915 Female, age 42, unknown 38.1
2223 Female, age 72, unknown 38.0
2021 Male, age 53, unknown 37.1
2218 Male, age 76, both hemispheres 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.4
Samples: 139

Max nTPM: 88.4
Min nTPM: 22.5
Std nTPM: 11.3
Median nTPM: 35.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 88.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 84.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 81.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 69.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 66.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 64.2
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 64.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 62.8
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 57.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 57.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 57.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.5
FF:10158-103A5 76 years, female 51.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 22.9
Min nTPM: 16.1
Sample A Female 22.9
Sample B Female 16.1
Sample C Male 21.3
Sample D Male 20.1
Periaqueductal gray
nTPM: 19.0
Samples: 3

Max nTPM: 19.6
Min nTPM: 18.3
Sample B Female 19.1
Sample C Male 19.6
Sample D Male 18.3
Substantia nigra
nTPM: 18.0
Samples: 4

Max nTPM: 19.5
Min nTPM: 16.0
Sample A Female 19.5
Sample B Female 16.0
Sample C Male 19.3
Sample D Male 17.3
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 23.6
Min nTPM: 19.9
Sample A Female 22.8
Sample B Female 23.6
Sample C Male 19.9
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 37.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 37.8
Samples: 4

Max nTPM: 39.7
Min nTPM: 36.9
Sample A Male 39.7
Sample B Male 37.4
Sample C Female 36.9
Sample D Female 37.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
68745492 Antisense, RP_050210_02_A10, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.