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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:126.7 nTPM
HPA:126.7 nTPM
GTEx:105.9 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Mouse:90.5 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 126.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 119.6
1827 Male, age 72, unknown 126.1
2586 Male, age 75, left hemisphere 121.5
1870 Female, age 42, unknown 121.2
2666 Male, age 74, left hemisphere 120.0
2411 Female, age 72, unknown 119.9
2219 Male, age 76, both hemispheres 119.1
2828 Female, age 72, unknown 117.8
2019 Male, age 18, unknown 117.6
1833 Male, age 53, unknown 117.3
1830 Male, age 51, unknown 115.8
Dorsal raphe nucleus
nTPM: 124.8
2298 Female, age 72, unknown 136.0
2047 Male, age 72, unknown 124.7
1828 Male, age 53, unknown 124.5
2016 Female, age 72, unknown 120.5
2750 Male, age 76, both hemispheres 118.4
Inferior colliculus
nTPM: 120.6
2097 Female, age 72, unknown 126.2
1848 Female, age 42, unknown 119.2
1890 Male, age 53, unknown 119.0
2849 Male, age 72, unknown 117.8
Median raphe nucleus
nTPM: 126.7
2220 Male, age 76, midline 126.7
Pedunculopontine tegmental nucleus
nTPM: 121.8
1921 Female, age 85, both hemispheres 124.5
2334 Male, age 80, both hemispheres 123.7
2338 Male, age 61, both hemispheres 117.2
Periaquaductal grey, anterior
nTPM: 122.8
1795 Male, age 51, unknown 126.1
1947 Male, age 18, unknown 124.7
2502 Female, age 75, unknown 117.5
Periaquaductal grey, dorsal
nTPM: 120.8
1840 Male, age 53, unknown 124.9
2850 Male, age 76, both hemispheres 121.1
1831 Male, age 72, unknown 120.0
2464 Female, age 72, unknown 117.1
Periaquaductal grey, lateral
nTPM: 122.6
2272 Male, age 74, both hemispheres 124.1
2053 Male, age 18, unknown 122.6
2140 Male, age 76, both hemispheres 121.2
Pretectal area
nTPM: 122.6
2224 Female, age 72, unknown 127.8
1816 Male, age 51, unknown 127.3
2273 Male, age 74, both hemispheres 124.4
2825 Male, age 18, unknown 123.1
1817 Female, age 42, unknown 122.8
1944 Female, age 72, unknown 122.6
2007 Male, age 72, unknown 121.6
2667 Female, age 75, unknown 121.6
1815 Male, age 53, unknown 121.0
2316 Male, age 76, right hemisphere 119.6
2407 Male, age 75, both hemispheres 116.4
Red nucleus
nTPM: 118.4
2725 Female, age 75, unknown 126.3
1821 Female, age 72, unknown 123.5
2503 Female, age 72, unknown 120.7
2785 Male, age 18, unknown 118.0
2227 Male, age 72, unknown 117.3
2823 Male, age 76, right hemisphere 117.1
2769 Male, age 72, unknown 117.0
1954 Female, age 42, unknown 116.7
2584 Male, age 75, left hemisphere 116.7
2588 Male, age 74, left hemisphere 116.7
1865 Male, age 51, unknown 116.2
1904 Male, age 53, unknown 114.8
Substantia nigra
nTPM: 124.3
1916 Female, age 42, unknown 130.5
2241 Male, age 72, unknown 129.4
1851 Male, age 51, unknown 126.2
1941 Male, age 53, unknown 125.4
1889 Female, age 72, unknown 124.0
2409 Female, age 72, unknown 122.3
2590 Female, age 75, unknown 122.3
2699 Male, age 18, unknown 121.3
2583 Male, age 75, right hemisphere 121.0
2665 Male, age 74, both hemispheres 120.2
Superior colliculus
nTPM: 119.7
1796 Male, age 53, unknown 125.4
2587 Male, age 74, left hemisphere 121.8
2261 Male, age 18, unknown 121.6
1895 Male, age 76, right hemisphere 119.9
2087 Female, age 72, unknown 119.2
2668 Female, age 75, unknown 119.2
1839 Male, age 51, unknown 119.0
1913 Female, age 42, unknown 117.8
2664 Male, age 75, both hemispheres 116.9
1995 Male, age 72, unknown 115.8
Ventral tegmental area
nTPM: 123.2
1915 Female, age 42, unknown 128.7
2410 Female, age 72, unknown 123.3
2223 Female, age 72, unknown 122.8
2218 Male, age 76, both hemispheres 122.1
2021 Male, age 53, unknown 121.3
1942 Male, age 51, unknown 121.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.9
Samples: 139

Max nTPM: 191.9
Min nTPM: 50.5
Std nTPM: 30.9
Median nTPM: 103.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 191.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 187.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 187.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 175.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 174.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 173.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 173.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 163.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 162.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 160.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 158.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 90.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 90.6
Samples: 4

Max nTPM: 97.2
Min nTPM: 83.1
Sample A Male 91.6
Sample B Male 90.3
Sample C Female 83.1
Sample D Female 97.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74357594 Antisense, RP_060117_01_A09, Mouse strain C57BL/6J (56 days, male) 0.7

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