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RCAN2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:76.0 nTPM
HPA:76.0 nTPM
GTEx:91.0 nTPM
FANTOM5:96.1 Scaled Tags Per Million
Pig:215.2 nTPM
Mouse:269.0 nTPM
Allen mouse:12.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 76.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.5
2219 Male, age 76, both hemispheres 65.0
2019 Male, age 18, unknown 47.8
2411 Female, age 72, unknown 46.9
1833 Male, age 53, unknown 32.7
1830 Male, age 51, unknown 22.4
1827 Male, age 72, unknown 20.6
1870 Female, age 42, unknown 19.9
2666 Male, age 74, left hemisphere 17.0
2828 Female, age 72, unknown 16.8
2586 Male, age 75, left hemisphere 15.8
Dorsal raphe nucleus
nTPM: 37.1
2750 Male, age 76, both hemispheres 53.8
2298 Female, age 72, unknown 48.6
2047 Male, age 72, unknown 45.9
1828 Male, age 53, unknown 25.1
2016 Female, age 72, unknown 12.4
Inferior colliculus
nTPM: 26.3
2097 Female, age 72, unknown 40.3
1890 Male, age 53, unknown 28.1
1848 Female, age 42, unknown 21.1
2849 Male, age 72, unknown 15.8
Median raphe nucleus
nTPM: 68.1
2220 Male, age 76, midline 68.1
Pedunculopontine tegmental nucleus
nTPM: 33.6
1921 Female, age 85, both hemispheres 46.0
2334 Male, age 80, both hemispheres 28.7
2338 Male, age 61, both hemispheres 26.3
Periaquaductal grey, anterior
nTPM: 18.9
2502 Female, age 75, unknown 21.8
1795 Male, age 51, unknown 19.7
1947 Male, age 18, unknown 15.1
Periaquaductal grey, dorsal
nTPM: 19.0
1831 Male, age 72, unknown 22.9
2464 Female, age 72, unknown 21.1
1840 Male, age 53, unknown 16.4
2850 Male, age 76, both hemispheres 15.5
Periaquaductal grey, lateral
nTPM: 11.2
2272 Male, age 74, both hemispheres 14.6
2053 Male, age 18, unknown 14.0
2140 Male, age 76, both hemispheres 4.9
Pretectal area
nTPM: 43.8
1944 Female, age 72, unknown 87.5
1817 Female, age 42, unknown 82.5
1815 Male, age 53, unknown 70.1
2007 Male, age 72, unknown 69.7
1816 Male, age 51, unknown 66.9
2667 Female, age 75, unknown 38.0
2224 Female, age 72, unknown 19.0
2316 Male, age 76, right hemisphere 14.0
2273 Male, age 74, both hemispheres 12.5
2407 Male, age 75, both hemispheres 11.9
2825 Male, age 18, unknown 9.1
Red nucleus
nTPM: 25.6
2785 Male, age 18, unknown 43.6
1821 Female, age 72, unknown 41.1
2584 Male, age 75, left hemisphere 29.0
1904 Male, age 53, unknown 26.7
2588 Male, age 74, left hemisphere 25.4
1954 Female, age 42, unknown 24.7
2725 Female, age 75, unknown 21.3
1865 Male, age 51, unknown 20.6
2503 Female, age 72, unknown 20.2
2823 Male, age 76, right hemisphere 20.0
2227 Male, age 72, unknown 17.4
2769 Male, age 72, unknown 16.8
Substantia nigra
nTPM: 76.0
1916 Female, age 42, unknown 106.6
2409 Female, age 72, unknown 99.3
2241 Male, age 72, unknown 95.8
1851 Male, age 51, unknown 91.7
1889 Female, age 72, unknown 85.2
1941 Male, age 53, unknown 84.7
2665 Male, age 74, both hemispheres 72.1
2699 Male, age 18, unknown 63.7
2583 Male, age 75, right hemisphere 32.3
2590 Female, age 75, unknown 28.6
Superior colliculus
nTPM: 30.8
2668 Female, age 75, unknown 66.1
2087 Female, age 72, unknown 65.1
2261 Male, age 18, unknown 30.2
1796 Male, age 53, unknown 30.1
1895 Male, age 76, right hemisphere 27.1
2587 Male, age 74, left hemisphere 25.6
1913 Female, age 42, unknown 24.5
1995 Male, age 72, unknown 19.4
1839 Male, age 51, unknown 17.2
2664 Male, age 75, both hemispheres 2.9
Ventral tegmental area
nTPM: 61.3
2410 Female, age 72, unknown 109.8
2218 Male, age 76, both hemispheres 95.5
1915 Female, age 42, unknown 73.2
1942 Male, age 51, unknown 41.3
2223 Female, age 72, unknown 27.5
2021 Male, age 53, unknown 20.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 91.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 91.0
Samples: 139

Max nTPM: 428.4
Min nTPM: 13.1
Std nTPM: 76.0
Median nTPM: 59.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 428.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 384.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 336.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 309.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 298.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 294.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 243.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 235.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 226.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 215.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 210.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 96.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 96.1
FF:10158-103A5 76 years, female 96.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 215.2
Pig sample Sample description nTPM
Midbrain
nTPM: 182.1
Samples: 4

Max nTPM: 229.6
Min nTPM: 137.3
Sample A Female 229.6
Sample B Female 166.6
Sample C Male 195.0
Sample D Male 137.3
Periaqueductal gray
nTPM: 123.2
Samples: 3

Max nTPM: 162.6
Min nTPM: 98.3
Sample B Female 108.6
Sample C Male 162.6
Sample D Male 98.3
Substantia nigra
nTPM: 215.2
Samples: 4

Max nTPM: 312.5
Min nTPM: 126.5
Sample A Female 274.8
Sample B Female 126.5
Sample C Male 312.5
Sample D Male 147.0
Superior colliculi
nTPM: 170.6
Samples: 4

Max nTPM: 236.5
Min nTPM: 80.2
Sample A Female 189.2
Sample B Female 80.2
Sample C Male 236.5
Sample D Male 176.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 269.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 269.0
Samples: 4

Max nTPM: 282.2
Min nTPM: 249.6
Sample A Male 249.6
Sample B Male 268.8
Sample C Female 282.2
Sample D Female 275.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.8
68798370 Antisense, RP_050215_02_C11, Mouse strain C57BL/6J (56 days, male) 13.0
71064278 Antisense, RP_050725_03_D11, Mouse strain C57BL/6J (56 days, male) 12.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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