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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:50.2 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:41.7 nTPM
Allen mouse:0.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 45.2
2019 Male, age 18, unknown 48.0
2586 Male, age 75, left hemisphere 47.4
1827 Male, age 72, unknown 47.2
2666 Male, age 74, left hemisphere 46.4
2219 Male, age 76, both hemispheres 45.1
2411 Female, age 72, unknown 45.1
1870 Female, age 42, unknown 44.5
2828 Female, age 72, unknown 43.0
1833 Male, age 53, unknown 42.9
1830 Male, age 51, unknown 42.4
Dorsal raphe nucleus
nTPM: 44.7
2298 Female, age 72, unknown 47.0
2047 Male, age 72, unknown 45.5
1828 Male, age 53, unknown 45.3
2750 Male, age 76, both hemispheres 44.7
2016 Female, age 72, unknown 41.0
Inferior colliculus
nTPM: 43.7
2097 Female, age 72, unknown 45.2
1848 Female, age 42, unknown 43.8
1890 Male, age 53, unknown 43.1
2849 Male, age 72, unknown 42.8
Median raphe nucleus
nTPM: 45.2
2220 Male, age 76, midline 45.2
Pedunculopontine tegmental nucleus
nTPM: 46.4
2334 Male, age 80, both hemispheres 48.3
1921 Female, age 85, both hemispheres 46.6
2338 Male, age 61, both hemispheres 44.4
Periaquaductal grey, anterior
nTPM: 44.6
1947 Male, age 18, unknown 46.1
1795 Male, age 51, unknown 45.6
2502 Female, age 75, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 41.4
1840 Male, age 53, unknown 42.2
2464 Female, age 72, unknown 42.1
1831 Male, age 72, unknown 40.9
2850 Male, age 76, both hemispheres 40.6
Periaquaductal grey, lateral
nTPM: 42.0
2272 Male, age 74, both hemispheres 45.1
2053 Male, age 18, unknown 41.8
2140 Male, age 76, both hemispheres 39.1
Pretectal area
nTPM: 46.4
2007 Male, age 72, unknown 53.5
1817 Female, age 42, unknown 51.6
1816 Male, age 51, unknown 50.4
1944 Female, age 72, unknown 48.4
1815 Male, age 53, unknown 47.5
2667 Female, age 75, unknown 46.5
2224 Female, age 72, unknown 45.3
2825 Male, age 18, unknown 43.8
2273 Male, age 74, both hemispheres 42.9
2316 Male, age 76, right hemisphere 41.2
2407 Male, age 75, both hemispheres 39.9
Red nucleus
nTPM: 44.5
1821 Female, age 72, unknown 47.4
2785 Male, age 18, unknown 47.4
1954 Female, age 42, unknown 45.6
2503 Female, age 72, unknown 44.9
1865 Male, age 51, unknown 44.7
2227 Male, age 72, unknown 44.0
2769 Male, age 72, unknown 44.0
2588 Male, age 74, left hemisphere 43.8
1904 Male, age 53, unknown 43.5
2725 Female, age 75, unknown 43.5
2823 Male, age 76, right hemisphere 43.0
2584 Male, age 75, left hemisphere 42.7
Substantia nigra
nTPM: 47.6
1941 Male, age 53, unknown 52.0
2665 Male, age 74, both hemispheres 51.3
1916 Female, age 42, unknown 51.0
1889 Female, age 72, unknown 50.5
1851 Male, age 51, unknown 48.1
2409 Female, age 72, unknown 46.4
2590 Female, age 75, unknown 46.3
2241 Male, age 72, unknown 44.2
2583 Male, age 75, right hemisphere 43.9
2699 Male, age 18, unknown 42.3
Superior colliculus
nTPM: 44.0
2668 Female, age 75, unknown 48.1
2087 Female, age 72, unknown 46.0
1895 Male, age 76, right hemisphere 44.9
1796 Male, age 53, unknown 44.2
2261 Male, age 18, unknown 44.2
2587 Male, age 74, left hemisphere 43.2
1839 Male, age 51, unknown 42.8
1913 Female, age 42, unknown 42.8
2664 Male, age 75, both hemispheres 42.8
1995 Male, age 72, unknown 41.2
Ventral tegmental area
nTPM: 45.7
2410 Female, age 72, unknown 51.5
2218 Male, age 76, both hemispheres 47.2
1915 Female, age 42, unknown 46.3
1942 Male, age 51, unknown 44.0
2021 Male, age 53, unknown 42.7
2223 Female, age 72, unknown 42.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.2
Samples: 139

Max nTPM: 153.1
Min nTPM: 22.7
Std nTPM: 16.0
Median nTPM: 48.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 153.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 104.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 86.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 83.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 82.0
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 74.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 73.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 73.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 72.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 72.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 71.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.1
FF:10158-103A5 76 years, female 37.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Midbrain
nTPM: 27.8
Samples: 4

Max nTPM: 32.4
Min nTPM: 25.0
Sample A Female 32.4
Sample B Female 27.2
Sample C Male 26.7
Sample D Male 25.0
Periaqueductal gray
nTPM: 26.2
Samples: 3

Max nTPM: 27.9
Min nTPM: 24.6
Sample B Female 26.0
Sample C Male 27.9
Sample D Male 24.6
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 31.0
Min nTPM: 22.5
Sample A Female 31.0
Sample B Female 25.4
Sample C Male 25.7
Sample D Male 22.5
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 35.9
Min nTPM: 26.1
Sample A Female 35.9
Sample B Female 35.5
Sample C Male 26.1
Sample D Male 26.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 48.7
Min nTPM: 38.8
Sample A Male 48.7
Sample B Male 40.5
Sample C Female 38.9
Sample D Female 38.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.5
68633279 Antisense, RP_050125_02_F04, Mouse strain C57BL/6J (56 days, male) 0.8
70919328 Antisense, RP_050713_01_B03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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