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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:137.6 nTPM
HPA:137.6 nTPM
GTEx:141.0 nTPM
FANTOM5:397.3 Scaled Tags Per Million
Pig:0.9 nTPM
Mouse:8.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 137.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.6
2411 Female, age 72, unknown 131.7
1830 Male, age 51, unknown 118.0
2019 Male, age 18, unknown 117.9
1833 Male, age 53, unknown 107.3
1870 Female, age 42, unknown 106.1
2828 Female, age 72, unknown 92.7
2586 Male, age 75, left hemisphere 91.4
2666 Male, age 74, left hemisphere 74.4
1827 Male, age 72, unknown 70.5
2219 Male, age 76, both hemispheres 66.1
Dorsal raphe nucleus
nTPM: 73.0
2750 Male, age 76, both hemispheres 141.4
2016 Female, age 72, unknown 72.5
1828 Male, age 53, unknown 65.7
2047 Male, age 72, unknown 45.3
2298 Female, age 72, unknown 39.9
Inferior colliculus
nTPM: 57.4
1890 Male, age 53, unknown 65.6
1848 Female, age 42, unknown 58.8
2849 Male, age 72, unknown 54.6
2097 Female, age 72, unknown 50.5
Median raphe nucleus
nTPM: 58.9
2220 Male, age 76, midline 58.9
Pedunculopontine tegmental nucleus
nTPM: 79.5
2334 Male, age 80, both hemispheres 88.9
1921 Female, age 85, both hemispheres 76.9
2338 Male, age 61, both hemispheres 72.7
Periaquaductal grey, anterior
nTPM: 49.0
1947 Male, age 18, unknown 56.0
1795 Male, age 51, unknown 48.6
2502 Female, age 75, unknown 42.3
Periaquaductal grey, dorsal
nTPM: 44.0
2464 Female, age 72, unknown 68.2
1831 Male, age 72, unknown 52.1
1840 Male, age 53, unknown 29.2
2850 Male, age 76, both hemispheres 26.7
Periaquaductal grey, lateral
nTPM: 47.6
2272 Male, age 74, both hemispheres 59.1
2053 Male, age 18, unknown 53.6
2140 Male, age 76, both hemispheres 30.1
Pretectal area
nTPM: 59.5
2316 Male, age 76, right hemisphere 87.5
2407 Male, age 75, both hemispheres 79.3
1815 Male, age 53, unknown 79.1
2007 Male, age 72, unknown 68.4
1817 Female, age 42, unknown 59.0
2825 Male, age 18, unknown 57.9
2273 Male, age 74, both hemispheres 53.7
2224 Female, age 72, unknown 48.3
1944 Female, age 72, unknown 41.9
2667 Female, age 75, unknown 41.7
1816 Male, age 51, unknown 37.5
Red nucleus
nTPM: 137.6
2823 Male, age 76, right hemisphere 177.8
1904 Male, age 53, unknown 151.8
2769 Male, age 72, unknown 149.5
2227 Male, age 72, unknown 147.7
1865 Male, age 51, unknown 140.2
2588 Male, age 74, left hemisphere 138.1
1821 Female, age 72, unknown 136.6
2503 Female, age 72, unknown 133.2
2785 Male, age 18, unknown 131.8
2725 Female, age 75, unknown 127.5
2584 Male, age 75, left hemisphere 109.2
1954 Female, age 42, unknown 107.8
Substantia nigra
nTPM: 71.4
2583 Male, age 75, right hemisphere 108.9
2590 Female, age 75, unknown 101.4
1851 Male, age 51, unknown 85.6
1889 Female, age 72, unknown 78.9
2409 Female, age 72, unknown 65.7
2699 Male, age 18, unknown 65.1
1941 Male, age 53, unknown 61.6
1916 Female, age 42, unknown 51.6
2665 Male, age 74, both hemispheres 49.3
2241 Male, age 72, unknown 45.9
Superior colliculus
nTPM: 79.0
1913 Female, age 42, unknown 121.3
1995 Male, age 72, unknown 117.9
1895 Male, age 76, right hemisphere 89.8
2668 Female, age 75, unknown 88.6
2587 Male, age 74, left hemisphere 81.4
1839 Male, age 51, unknown 80.4
1796 Male, age 53, unknown 64.4
2664 Male, age 75, both hemispheres 54.0
2087 Female, age 72, unknown 47.2
2261 Male, age 18, unknown 45.4
Ventral tegmental area
nTPM: 85.3
2223 Female, age 72, unknown 125.2
2410 Female, age 72, unknown 95.5
1942 Male, age 51, unknown 77.4
2021 Male, age 53, unknown 76.0
2218 Male, age 76, both hemispheres 74.7
1915 Female, age 42, unknown 62.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 141.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 141.0
Samples: 139

Max nTPM: 734.2
Min nTPM: 17.5
Std nTPM: 100.6
Median nTPM: 115.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 734.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 557.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 507.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 367.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 311.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 308.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 300.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 297.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 291.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 281.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 279.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 397.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 397.3
FF:10158-103A5 76 years, female 397.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.9
Pig sample Sample description nTPM
Midbrain
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Female 0.7
Sample B Female 0.4
Sample C Male 0.2
Sample D Male 0.4
Periaqueductal gray
nTPM: 0.4
Samples: 3

Max nTPM: 0.4
Min nTPM: 0.4
Sample B Female 0.4
Sample C Male 0.4
Sample D Male 0.4
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.4
Sample A Female 0.6
Sample B Female 2.0
Sample C Male 0.4
Sample D Male 0.4
Superior colliculi
nTPM: 0.5
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.2
Sample A Female 0.7
Sample B Female 0.8
Sample C Male 0.2
Sample D Male 0.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.3
Sample A Male 10.3
Sample B Male 7.3
Sample C Female 7.3
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68157418 Antisense, RP_041116_02_F11, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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