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FNDC9
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.2 nTPM
HPA:5.2 nTPM
GTEx:16.9 nTPM
FANTOM5:40.7 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 5.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.9
1781 Male, age 74, unknown 3.5
2481 Female, age 94, left hemisphere 2.4
1857 Female, age 85, left hemisphere 2.0
2288 Male, age 75, left hemisphere 2.0
2289 Male, age 61, right hemisphere 1.7
1854 Male, age 80, left hemisphere 1.6
2290 Female, age 72, unknown 1.0
2846 Female, age 79, unknown 0.7
Claustrum
nTPM: 0.9
2196 Female, age 79, unknown 3.1
2491 Male, age 75, both hemispheres 2.3
2392 Female, age 94, both hemispheres 0.9
2645 Female, age 72, unknown 0.7
2198 Male, age 80, both hemispheres 0.6
2284 Female, age 91, both hemispheres 0.6
1956 Male, age 74, unknown 0.3
2292 Female, age 85, both hemispheres 0.0
2568 Male, age 61, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.1
2483 Female, age 94, right hemisphere 1.1
2287 Male, age 75, right hemisphere 0.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 5.2
1856 Female, age 91, right hemisphere 9.8
1783 Male, age 74, unknown 8.3
2824 Male, age 61, right hemisphere 7.2
2698 Female, age 72, unknown 5.7
1806 Female, age 85, left hemisphere 4.5
2732 Male, age 80, right hemisphere 4.5
2286 Male, age 75, left hemisphere 1.7
2391 Female, age 94, left hemisphere 0.2
Nucleus basalis of Meynert
nTPM: 0.5
2484 Female, age 94, left hemisphere 1.1
2821 Male, age 75, both hemispheres 0.9
2393 Male, age 80, right hemisphere 0.2
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 4.8
1979 Male, age 74, unknown 9.9
1812 Female, age 91, both hemispheres 4.5
2029 Male, age 61, right hemisphere 3.4
2195 Female, age 85, both hemispheres 3.2
2775 Male, age 80, right hemisphere 3.0
Olfactory tubercle
nTPM: 3.1
1998 Female, age 91, both hemispheres 3.6
1846 Male, age 80, right hemisphere 3.4
2487 Female, age 94, left hemisphere 2.9
2856 Male, age 75, right hemisphere 2.5
Putamen
nTPM: 1.1
1937 Female, age 91, right hemisphere 2.8
1838 Male, age 80, right hemisphere 2.1
2482 Female, age 94, left hemisphere 1.6
2647 Male, age 75, left hemisphere 0.8
2466 Female, age 79, unknown 0.1
2489 Female, age 72, unknown 0.1
1829 Male, age 74, unknown 0.0
Septal nuclei
nTPM: 3.2
2031 Female, age 72, unknown 6.0
2009 Female, age 91, both hemispheres 4.0
1960 Male, age 74, unknown 3.5
2629 Female, age 94, right hemisphere 3.2
2059 Female, age 85, both hemispheres 2.5
2199 Male, age 80, right hemisphere 2.5
2394 Male, age 61, left hemisphere 1.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 25.3
Min nTPM: 0.1
Std nTPM: 3.5
Median nTPM: 2.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 25.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 23.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 19.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 15.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 15.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 14.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 14.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 13.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 12.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 11.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 11.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.9
Samples: 246

Max nTPM: 75.3
Min nTPM: 0.4
Std nTPM: 12.3
Median nTPM: 15.3
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 75.3
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 69.9
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 59.0
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 51.0
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 50.0
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 49.8
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 47.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 43.3
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 41.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 40.2
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 39.1
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Brain - Putamen (basal ganglia)
Average nTPM: 3.2
Samples: 205

Max nTPM: 33.5
Min nTPM: 0.1
Std nTPM: 3.9
Median nTPM: 1.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 33.5
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 21.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 16.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 15.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 15.1
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 14.4
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 14.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 12.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 11.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 10.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 9.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.9
FF:10164-103B2 76 years, female 25.9
Globus pallidus
Scaled Tags Per Million: 2.0
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.8
Nucleus accumbens
Scaled Tags Per Million: 20.7
FF:10037-101F1 23-56 years, mixed 20.7
Putamen
Scaled Tags Per Million: 40.7
FF:10176-103C5 60 years, female 40.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.