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ZNF680
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.6 nTPM
HPA:10.6 nTPM
GTEx:12.4 nTPM
FANTOM5:100.8 Scaled Tags Per Million

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 10.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 10.5
2481 Female, age 94, left hemisphere 15.5
1857 Female, age 85, left hemisphere 11.6
2290 Female, age 72, unknown 11.0
2288 Male, age 75, left hemisphere 10.9
2289 Male, age 61, right hemisphere 10.2
1854 Male, age 80, left hemisphere 9.2
2846 Female, age 79, unknown 8.2
1781 Male, age 74, unknown 7.5
Claustrum
nTPM: 5.7
2392 Female, age 94, both hemispheres 7.4
2196 Female, age 79, unknown 6.4
1956 Male, age 74, unknown 6.2
2491 Male, age 75, both hemispheres 6.2
2284 Female, age 91, both hemispheres 6.0
2198 Male, age 80, both hemispheres 5.4
2568 Male, age 61, both hemispheres 5.0
2645 Female, age 72, unknown 4.6
2292 Female, age 85, both hemispheres 4.5
Globus pallidus, externus
nTPM: 9.0
1996 Male, age 80, right hemisphere 11.2
2772 Female, age 79, unknown 9.5
2646 Male, age 61, right hemisphere 8.6
2567 Female, age 72, unknown 8.4
2395 Male, age 75, both hemispheres 7.3
Globus pallidus, internus
nTPM: 10.6
1818 Male, age 74, unknown 12.4
2287 Male, age 75, right hemisphere 11.9
2778 Female, age 91, both hemispheres 11.6
2483 Female, age 94, right hemisphere 11.4
2037 Male, age 80, right hemisphere 10.1
2111 Female, age 85, right hemisphere 9.9
2566 Female, age 72, unknown 6.8
Nucleus accumbens
nTPM: 9.4
2391 Female, age 94, left hemisphere 12.1
2286 Male, age 75, left hemisphere 11.4
2698 Female, age 72, unknown 10.2
2824 Male, age 61, right hemisphere 10.2
1806 Female, age 85, left hemisphere 9.4
1856 Female, age 91, right hemisphere 9.0
1783 Male, age 74, unknown 7.5
2732 Male, age 80, right hemisphere 5.0
Nucleus basalis of Meynert
nTPM: 8.3
2393 Male, age 80, right hemisphere 9.4
2569 Male, age 61, both hemispheres 8.6
2821 Male, age 75, both hemispheres 7.6
2484 Female, age 94, left hemisphere 7.5
Nucleus of the diagonal band
nTPM: 6.4
2029 Male, age 61, right hemisphere 7.4
2195 Female, age 85, both hemispheres 6.8
1812 Female, age 91, both hemispheres 6.3
1979 Male, age 74, unknown 6.0
2775 Male, age 80, right hemisphere 5.7
Olfactory tubercle
nTPM: 7.1
2856 Male, age 75, right hemisphere 10.3
2487 Female, age 94, left hemisphere 7.2
1846 Male, age 80, right hemisphere 6.4
1998 Female, age 91, both hemispheres 4.7
Putamen
nTPM: 8.4
2482 Female, age 94, left hemisphere 10.7
1937 Female, age 91, right hemisphere 10.0
1838 Male, age 80, right hemisphere 9.3
2647 Male, age 75, left hemisphere 8.2
1829 Male, age 74, unknown 8.1
2489 Female, age 72, unknown 6.6
2466 Female, age 79, unknown 5.7
Septal nuclei
nTPM: 6.0
2199 Male, age 80, right hemisphere 7.5
2629 Female, age 94, right hemisphere 6.6
2031 Female, age 72, unknown 6.5
2394 Male, age 61, left hemisphere 6.1
2009 Female, age 91, both hemispheres 5.6
1960 Male, age 74, unknown 4.9
2059 Female, age 85, both hemispheres 4.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.4
Samples: 246

Max nTPM: 26.5
Min nTPM: 4.8
Std nTPM: 3.9
Median nTPM: 11.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 26.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 24.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 24.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 23.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 22.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 21.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 21.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 21.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 20.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 20.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.3
Samples: 246

Max nTPM: 33.7
Min nTPM: 4.7
Std nTPM: 3.8
Median nTPM: 10.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 33.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 27.5
GTEX-QDT8-0011-R6A-SM-32PKI 30-39 years, female 25.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 23.7
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 23.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 23.2
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 20.9
GTEX-ZVZQ-0011-R6b-SM-57WAY 60-69 years, female 20.4
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 20.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 19.9
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 19.3
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Brain - Putamen (basal ganglia)
Average nTPM: 11.9
Samples: 205

Max nTPM: 30.6
Min nTPM: 3.4
Std nTPM: 4.1
Median nTPM: 11.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 30.6
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 29.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 26.9
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 25.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 20.9
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 20.9
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 20.0
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 19.6
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 19.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 19.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 19.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 100.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 84.8
FF:10164-103B2 76 years, female 84.8
Globus pallidus
Scaled Tags Per Million: 78.9
FF:10161-103A8 76 years, female 92.3
FF:10175-103C4 60 years, female 65.5
Nucleus accumbens
Scaled Tags Per Million: 36.2
FF:10037-101F1 23-56 years, mixed 36.2
Putamen
Scaled Tags Per Million: 100.8
FF:10176-103C5 60 years, female 100.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.