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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.3 nTPM
HPA:51.3 nTPM
GTEx:121.1 nTPM
FANTOM5:69.2 Scaled Tags Per Million
Pig:32.9 nTPM
Mouse:60.6 nTPM
Allen mouse:1.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 51.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.2
2481 Female, age 94, left hemisphere 37.1
2289 Male, age 61, right hemisphere 36.9
2290 Female, age 72, unknown 34.5
2288 Male, age 75, left hemisphere 33.9
1781 Male, age 74, unknown 31.2
1854 Male, age 80, left hemisphere 31.0
2846 Female, age 79, unknown 30.9
1857 Female, age 85, left hemisphere 30.5
Claustrum
nTPM: 34.4
2568 Male, age 61, both hemispheres 41.6
2292 Female, age 85, both hemispheres 39.4
2645 Female, age 72, unknown 37.4
2284 Female, age 91, both hemispheres 36.1
2196 Female, age 79, unknown 33.8
2491 Male, age 75, both hemispheres 32.1
1956 Male, age 74, unknown 31.9
2198 Male, age 80, both hemispheres 30.9
2392 Female, age 94, both hemispheres 26.6
Globus pallidus, externus
nTPM: 51.3
2567 Female, age 72, unknown 62.0
2646 Male, age 61, right hemisphere 61.3
1996 Male, age 80, right hemisphere 54.3
2772 Female, age 79, unknown 44.9
2395 Male, age 75, both hemispheres 33.8
Globus pallidus, internus
nTPM: 43.1
2566 Female, age 72, unknown 58.2
2037 Male, age 80, right hemisphere 49.1
2483 Female, age 94, right hemisphere 42.5
1818 Male, age 74, unknown 42.3
2111 Female, age 85, right hemisphere 38.4
2778 Female, age 91, both hemispheres 35.9
2287 Male, age 75, right hemisphere 35.1
Nucleus accumbens
nTPM: 31.6
2698 Female, age 72, unknown 37.8
2732 Male, age 80, right hemisphere 37.2
1806 Female, age 85, left hemisphere 32.8
1783 Male, age 74, unknown 31.9
2286 Male, age 75, left hemisphere 31.1
2391 Female, age 94, left hemisphere 29.8
1856 Female, age 91, right hemisphere 26.5
2824 Male, age 61, right hemisphere 25.7
Nucleus basalis of Meynert
nTPM: 39.8
2569 Male, age 61, both hemispheres 69.3
2821 Male, age 75, both hemispheres 32.0
2484 Female, age 94, left hemisphere 30.2
2393 Male, age 80, right hemisphere 27.8
Nucleus of the diagonal band
nTPM: 30.5
1979 Male, age 74, unknown 35.2
2775 Male, age 80, right hemisphere 31.2
2195 Female, age 85, both hemispheres 31.1
1812 Female, age 91, both hemispheres 28.7
2029 Male, age 61, right hemisphere 26.3
Olfactory tubercle
nTPM: 29.5
2856 Male, age 75, right hemisphere 32.3
1846 Male, age 80, right hemisphere 31.3
1998 Female, age 91, both hemispheres 29.7
2487 Female, age 94, left hemisphere 24.6
Putamen
nTPM: 32.0
2647 Male, age 75, left hemisphere 44.7
2489 Female, age 72, unknown 34.4
2482 Female, age 94, left hemisphere 33.1
1829 Male, age 74, unknown 32.0
1937 Female, age 91, right hemisphere 27.5
1838 Male, age 80, right hemisphere 27.4
2466 Female, age 79, unknown 24.9
Septal nuclei
nTPM: 33.8
2059 Female, age 85, both hemispheres 41.2
2394 Male, age 61, left hemisphere 40.7
2199 Male, age 80, right hemisphere 32.8
1960 Male, age 74, unknown 32.5
2031 Female, age 72, unknown 30.6
2629 Female, age 94, right hemisphere 30.6
2009 Female, age 91, both hemispheres 28.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 121.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 109.3
Samples: 246

Max nTPM: 294.3
Min nTPM: 34.4
Std nTPM: 45.9
Median nTPM: 98.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 294.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 289.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 271.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 261.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 251.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 231.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 225.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 210.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 208.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 193.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 193.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 118.8
Samples: 246

Max nTPM: 306.7
Min nTPM: 28.4
Std nTPM: 54.0
Median nTPM: 106.0
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 306.7
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 302.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 284.2
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 281.4
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 269.6
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 260.3
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 252.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 251.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 247.7
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 245.3
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 236.9
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Brain - Putamen (basal ganglia)
Average nTPM: 121.1
Samples: 205

Max nTPM: 303.4
Min nTPM: 31.9
Std nTPM: 48.8
Median nTPM: 111.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 303.4
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 277.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 250.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 248.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 236.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 235.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 233.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 231.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 218.0
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 217.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 213.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 69.2
FF:10164-103B2 76 years, female 69.2
Globus pallidus
Scaled Tags Per Million: 53.1
FF:10161-103A8 76 years, female 69.2
FF:10175-103C4 60 years, female 37.1
Nucleus accumbens
Scaled Tags Per Million: 59.1
FF:10037-101F1 23-56 years, mixed 59.1
Putamen
Scaled Tags Per Million: 60.1
FF:10176-103C5 60 years, female 60.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 32.9
Pig sample Sample description nTPM
Caudate
nTPM: 31.4
Samples: 4

Max nTPM: 38.5
Min nTPM: 24.2
Sample A Female 24.2
Sample B Female 33.7
Sample C Male 38.5
Sample D Male 29.3
Putamen
nTPM: 32.9
Samples: 4

Max nTPM: 38.8
Min nTPM: 28.5
Sample A Female 30.7
Sample B Female 28.5
Sample C Male 38.8
Sample D Male 33.5
Septum
nTPM: 27.3
Samples: 4

Max nTPM: 31.8
Min nTPM: 20.9
Sample A Female 31.8
Sample B Female 27.4
Sample C Male 29.1
Sample D Male 20.9
Ventral pallidum
nTPM: 31.1
Samples: 4

Max nTPM: 40.7
Min nTPM: 24.3
Sample A Female 24.3
Sample B Female 31.1
Sample C Male 40.7
Sample D Male 28.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 53.2
Samples: 4

Max nTPM: 62.5
Min nTPM: 47.7
Sample A Male 50.3
Sample B Male 62.5
Sample C Female 47.7
Sample D Female 52.2
Septum
nTPM: 47.9
Samples: 4

Max nTPM: 55.3
Min nTPM: 41.9
Sample A Male 55.3
Sample B Male 44.9
Sample C Female 49.4
Sample D Female 41.9
Ventral forebrain
nTPM: 60.6
Samples: 4

Max nTPM: 73.6
Min nTPM: 54.3
Sample A Male 57.5
Sample B Male 57.0
Sample C Female 73.6
Sample D Female 54.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
75079746 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.5
75694242 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 1.1
75079746 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 1.1
75694242 Antisense, RP_060412_02_F02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.