ABOUTMENU
HELP
NEWS
AGFG1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:34.5 nTPM
FANTOM5:93.4 Scaled Tags Per Million
Pig:30.9 nTPM
Mouse:35.0 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 25.2
2019 Male, age 18, unknown 34.8
2666 Male, age 74, left hemisphere 27.5
1833 Male, age 53, unknown 27.2
1870 Female, age 42, unknown 27.1
1830 Male, age 51, unknown 26.7
2411 Female, age 72, unknown 26.6
2828 Female, age 72, unknown 25.7
1827 Male, age 72, unknown 23.6
2219 Male, age 76, both hemispheres 17.7
2586 Male, age 75, left hemisphere 14.9
Dorsal raphe nucleus
nTPM: 20.9
2750 Male, age 76, both hemispheres 25.5
1828 Male, age 53, unknown 22.1
2298 Female, age 72, unknown 19.8
2016 Female, age 72, unknown 19.5
2047 Male, age 72, unknown 17.7
Inferior colliculus
nTPM: 22.9
2097 Female, age 72, unknown 27.2
1890 Male, age 53, unknown 23.7
2849 Male, age 72, unknown 20.5
1848 Female, age 42, unknown 20.0
Median raphe nucleus
nTPM: 23.0
2220 Male, age 76, midline 23.0
Pedunculopontine tegmental nucleus
nTPM: 23.0
2334 Male, age 80, both hemispheres 25.3
2338 Male, age 61, both hemispheres 22.0
1921 Female, age 85, both hemispheres 21.9
Periaquaductal grey, anterior
nTPM: 21.1
2502 Female, age 75, unknown 24.3
1795 Male, age 51, unknown 20.7
1947 Male, age 18, unknown 18.1
Periaquaductal grey, dorsal
nTPM: 21.9
1831 Male, age 72, unknown 25.9
2850 Male, age 76, both hemispheres 25.4
2464 Female, age 72, unknown 20.3
1840 Male, age 53, unknown 16.0
Periaquaductal grey, lateral
nTPM: 23.3
2053 Male, age 18, unknown 23.7
2140 Male, age 76, both hemispheres 23.6
2272 Male, age 74, both hemispheres 22.5
Pretectal area
nTPM: 29.0
1817 Female, age 42, unknown 38.4
1944 Female, age 72, unknown 38.3
1816 Male, age 51, unknown 37.0
1815 Male, age 53, unknown 32.8
2007 Male, age 72, unknown 32.0
2316 Male, age 76, right hemisphere 25.7
2273 Male, age 74, both hemispheres 25.0
2667 Female, age 75, unknown 24.5
2407 Male, age 75, both hemispheres 22.8
2224 Female, age 72, unknown 22.4
2825 Male, age 18, unknown 19.9
Red nucleus
nTPM: 28.3
2785 Male, age 18, unknown 34.7
1904 Male, age 53, unknown 32.2
1865 Male, age 51, unknown 31.0
1821 Female, age 72, unknown 29.4
1954 Female, age 42, unknown 29.0
2503 Female, age 72, unknown 28.2
2227 Male, age 72, unknown 27.5
2769 Male, age 72, unknown 26.9
2725 Female, age 75, unknown 26.4
2823 Male, age 76, right hemisphere 25.1
2588 Male, age 74, left hemisphere 24.6
2584 Male, age 75, left hemisphere 24.3
Substantia nigra
nTPM: 24.7
1889 Female, age 72, unknown 33.4
2665 Male, age 74, both hemispheres 28.4
2409 Female, age 72, unknown 26.9
2583 Male, age 75, right hemisphere 25.0
1851 Male, age 51, unknown 24.3
1941 Male, age 53, unknown 23.6
2590 Female, age 75, unknown 23.3
2241 Male, age 72, unknown 23.0
1916 Female, age 42, unknown 21.6
2699 Male, age 18, unknown 17.7
Superior colliculus
nTPM: 27.4
2087 Female, age 72, unknown 33.1
1913 Female, age 42, unknown 32.8
2261 Male, age 18, unknown 32.5
1995 Male, age 72, unknown 30.5
2668 Female, age 75, unknown 30.3
2587 Male, age 74, left hemisphere 28.5
1796 Male, age 53, unknown 25.2
1895 Male, age 76, right hemisphere 22.0
1839 Male, age 51, unknown 20.7
2664 Male, age 75, both hemispheres 17.9
Ventral tegmental area
nTPM: 25.9
2223 Female, age 72, unknown 32.9
2410 Female, age 72, unknown 30.2
2218 Male, age 76, both hemispheres 28.3
2021 Male, age 53, unknown 23.0
1942 Male, age 51, unknown 21.3
1915 Female, age 42, unknown 19.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.5
Samples: 139

Max nTPM: 61.0
Min nTPM: 20.4
Std nTPM: 6.7
Median nTPM: 33.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 61.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 59.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 52.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 51.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 48.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 48.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 47.4
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 47.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 45.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 44.5
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 44.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.4
FF:10158-103A5 76 years, female 93.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.9
Pig sample Sample description nTPM
Midbrain
nTPM: 30.9
Samples: 4

Max nTPM: 37.8
Min nTPM: 22.7
Sample A Female 35.1
Sample B Female 28.1
Sample C Male 37.8
Sample D Male 22.7
Periaqueductal gray
nTPM: 24.5
Samples: 3

Max nTPM: 26.0
Min nTPM: 23.7
Sample B Female 26.0
Sample C Male 23.9
Sample D Male 23.7
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 28.9
Min nTPM: 23.0
Sample A Female 28.9
Sample B Female 23.0
Sample C Male 27.5
Sample D Male 25.3
Superior colliculi
nTPM: 26.0
Samples: 4

Max nTPM: 31.5
Min nTPM: 21.8
Sample A Female 25.6
Sample B Female 21.8
Sample C Male 31.5
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 35.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 35.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 30.8
Sample A Male 30.8
Sample B Male 37.3
Sample C Female 37.3
Sample D Female 34.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
69173488 Antisense, RP_050329_01_F07, Mouse strain C57BL/6J (56 days, male) 5.7

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.