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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:15.2 nTPM
HPA:15.2 nTPM
GTEx:20.9 nTPM
FANTOM5:13.5 Scaled Tags Per Million
Pig:1.7 nTPM
Mouse:4.7 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody CAB025429
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 7.9
2289 Male, age 61, right hemisphere 9.1
2288 Male, age 75, left hemisphere 9.0
2481 Female, age 94, left hemisphere 8.5
1854 Male, age 80, left hemisphere 7.9
1857 Female, age 85, left hemisphere 7.3
1781 Male, age 74, unknown 7.2
2846 Female, age 79, unknown 7.1
2290 Female, age 72, unknown 6.6
Claustrum
nTPM: 6.6
2568 Male, age 61, both hemispheres 7.8
2292 Female, age 85, both hemispheres 7.7
2645 Female, age 72, unknown 7.4
2284 Female, age 91, both hemispheres 7.3
2198 Male, age 80, both hemispheres 6.5
2392 Female, age 94, both hemispheres 6.3
2491 Male, age 75, both hemispheres 5.9
2196 Female, age 79, unknown 5.6
1956 Male, age 74, unknown 5.1
Globus pallidus, externus
nTPM: 13.9
2567 Female, age 72, unknown 19.0
1996 Male, age 80, right hemisphere 14.3
2395 Male, age 75, both hemispheres 12.6
2646 Male, age 61, right hemisphere 11.7
2772 Female, age 79, unknown 11.7
Globus pallidus, internus
nTPM: 15.2
2287 Male, age 75, right hemisphere 18.4
2111 Female, age 85, right hemisphere 17.6
2566 Female, age 72, unknown 15.8
1818 Male, age 74, unknown 15.5
2483 Female, age 94, right hemisphere 14.1
2037 Male, age 80, right hemisphere 13.6
2778 Female, age 91, both hemispheres 11.6
Nucleus accumbens
nTPM: 7.0
1856 Female, age 91, right hemisphere 8.1
2824 Male, age 61, right hemisphere 8.1
2286 Male, age 75, left hemisphere 7.1
1806 Female, age 85, left hemisphere 6.9
2732 Male, age 80, right hemisphere 6.9
2391 Female, age 94, left hemisphere 6.7
2698 Female, age 72, unknown 6.5
1783 Male, age 74, unknown 6.1
Nucleus basalis of Meynert
nTPM: 10.9
2569 Male, age 61, both hemispheres 13.5
2821 Male, age 75, both hemispheres 11.0
2484 Female, age 94, left hemisphere 9.8
2393 Male, age 80, right hemisphere 9.1
Nucleus of the diagonal band
nTPM: 6.2
2029 Male, age 61, right hemisphere 7.0
1812 Female, age 91, both hemispheres 6.3
2775 Male, age 80, right hemisphere 6.0
1979 Male, age 74, unknown 5.9
2195 Female, age 85, both hemispheres 5.7
Olfactory tubercle
nTPM: 6.4
1998 Female, age 91, both hemispheres 6.9
2856 Male, age 75, right hemisphere 6.5
1846 Male, age 80, right hemisphere 6.3
2487 Female, age 94, left hemisphere 6.0
Putamen
nTPM: 11.6
2489 Female, age 72, unknown 17.1
2647 Male, age 75, left hemisphere 16.9
1829 Male, age 74, unknown 10.5
1838 Male, age 80, right hemisphere 10.0
2482 Female, age 94, left hemisphere 9.4
1937 Female, age 91, right hemisphere 9.2
2466 Female, age 79, unknown 8.0
Septal nuclei
nTPM: 6.6
2199 Male, age 80, right hemisphere 8.7
2394 Male, age 61, left hemisphere 8.4
2059 Female, age 85, both hemispheres 6.5
2009 Female, age 91, both hemispheres 6.1
2031 Female, age 72, unknown 5.8
2629 Female, age 94, right hemisphere 5.8
1960 Male, age 74, unknown 4.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 20.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.1
Samples: 246

Max nTPM: 61.3
Min nTPM: 2.1
Std nTPM: 8.2
Median nTPM: 11.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 61.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 41.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 40.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 39.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 35.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 34.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 34.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 34.0
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 33.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 32.9
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 31.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.2
Samples: 246

Max nTPM: 51.4
Min nTPM: 1.1
Std nTPM: 5.2
Median nTPM: 4.9
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 51.4
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 32.1
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 25.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 22.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 22.2
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 21.0
GTEX-1HBPM-0011-R6b-SM-ARU73 60-69 years, female 19.5
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 17.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 17.7
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 16.6
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 16.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.9
Samples: 205

Max nTPM: 66.8
Min nTPM: 3.4
Std nTPM: 12.4
Median nTPM: 18.0
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 66.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 63.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 60.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 57.6
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 56.6
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 56.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 55.3
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 52.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 51.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 49.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 49.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 13.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 8.8
FF:10164-103B2 76 years, female 8.8
Globus pallidus
Scaled Tags Per Million: 13.5
FF:10161-103A8 76 years, female 17.7
FF:10175-103C4 60 years, female 9.4
Nucleus accumbens
Scaled Tags Per Million: 8.1
FF:10037-101F1 23-56 years, mixed 8.1
Putamen
Scaled Tags Per Million: 4.0
FF:10176-103C5 60 years, female 4.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.7
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Female 0.9
Sample B Female 0.8
Sample C Male 1.2
Sample D Male 1.1
Putamen
nTPM: 1.7
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.2
Sample A Female 1.7
Sample B Female 1.2
Sample C Male 2.3
Sample D Male 1.7
Septum
nTPM: 1.4
Samples: 4

Max nTPM: 2.4
Min nTPM: 1.0
Sample A Female 1.1
Sample B Female 1.0
Sample C Male 2.4
Sample D Male 1.0
Ventral pallidum
nTPM: 1.4
Samples: 4

Max nTPM: 2.2
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 1.6
Sample C Male 2.2
Sample D Male 1.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 4.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 2.5
Samples: 4

Max nTPM: 3.3
Min nTPM: 1.7
Sample A Male 1.7
Sample B Male 3.1
Sample C Female 3.3
Sample D Female 1.9
Septum
nTPM: 2.9
Samples: 4

Max nTPM: 3.9
Min nTPM: 2.3
Sample A Male 3.9
Sample B Male 2.8
Sample C Female 2.3
Sample D Female 2.5
Ventral forebrain
nTPM: 4.7
Samples: 4

Max nTPM: 5.4
Min nTPM: 3.6
Sample A Male 3.6
Sample B Male 5.4
Sample C Female 5.2
Sample D Female 4.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
68924461 Antisense, RP_050303_02_D06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
68924461 Antisense, RP_050303_02_D06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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