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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.7 nTPM
HPA:21.7 nTPM
GTEx:38.2 nTPM
FANTOM5:58.2 Scaled Tags Per Million
Pig:61.6 nTPM
Mouse:38.6 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 20.9
2586 Male, age 75, left hemisphere 29.1
2666 Male, age 74, left hemisphere 24.2
2828 Female, age 72, unknown 22.9
1827 Male, age 72, unknown 22.3
1833 Male, age 53, unknown 20.1
1830 Male, age 51, unknown 19.1
2019 Male, age 18, unknown 18.4
2219 Male, age 76, both hemispheres 18.2
2411 Female, age 72, unknown 17.6
1870 Female, age 42, unknown 17.4
Dorsal raphe nucleus
nTPM: 17.6
1828 Male, age 53, unknown 21.0
2750 Male, age 76, both hemispheres 17.9
2047 Male, age 72, unknown 17.0
2016 Female, age 72, unknown 16.8
2298 Female, age 72, unknown 15.5
Inferior colliculus
nTPM: 20.1
2849 Male, age 72, unknown 24.1
1848 Female, age 42, unknown 20.6
1890 Male, age 53, unknown 18.4
2097 Female, age 72, unknown 17.5
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Pedunculopontine tegmental nucleus
nTPM: 18.3
2334 Male, age 80, both hemispheres 18.7
1921 Female, age 85, both hemispheres 18.5
2338 Male, age 61, both hemispheres 17.7
Periaquaductal grey, anterior
nTPM: 21.7
1947 Male, age 18, unknown 23.3
2502 Female, age 75, unknown 22.0
1795 Male, age 51, unknown 19.8
Periaquaductal grey, dorsal
nTPM: 18.2
1831 Male, age 72, unknown 19.1
2850 Male, age 76, both hemispheres 18.7
2464 Female, age 72, unknown 18.2
1840 Male, age 53, unknown 16.6
Periaquaductal grey, lateral
nTPM: 16.0
2053 Male, age 18, unknown 17.3
2140 Male, age 76, both hemispheres 16.7
2272 Male, age 74, both hemispheres 13.9
Pretectal area
nTPM: 20.0
1816 Male, age 51, unknown 24.7
1817 Female, age 42, unknown 22.7
1815 Male, age 53, unknown 21.9
2407 Male, age 75, both hemispheres 21.7
2007 Male, age 72, unknown 21.3
1944 Female, age 72, unknown 20.9
2825 Male, age 18, unknown 20.8
2667 Female, age 75, unknown 20.0
2316 Male, age 76, right hemisphere 18.0
2224 Female, age 72, unknown 14.9
2273 Male, age 74, both hemispheres 12.8
Red nucleus
nTPM: 21.6
2584 Male, age 75, left hemisphere 27.0
2588 Male, age 74, left hemisphere 24.5
2769 Male, age 72, unknown 22.4
2823 Male, age 76, right hemisphere 22.4
1821 Female, age 72, unknown 22.1
2227 Male, age 72, unknown 21.6
1954 Female, age 42, unknown 20.9
2725 Female, age 75, unknown 20.3
2503 Female, age 72, unknown 19.7
1865 Male, age 51, unknown 19.4
1904 Male, age 53, unknown 19.4
2785 Male, age 18, unknown 19.2
Substantia nigra
nTPM: 20.8
2665 Male, age 74, both hemispheres 27.1
1941 Male, age 53, unknown 24.0
1916 Female, age 42, unknown 22.3
2583 Male, age 75, right hemisphere 21.6
1889 Female, age 72, unknown 21.0
2699 Male, age 18, unknown 20.5
2590 Female, age 75, unknown 20.2
1851 Male, age 51, unknown 19.6
2241 Male, age 72, unknown 16.5
2409 Female, age 72, unknown 15.1
Superior colliculus
nTPM: 20.7
2664 Male, age 75, both hemispheres 29.5
2087 Female, age 72, unknown 21.5
2668 Female, age 75, unknown 21.5
1839 Male, age 51, unknown 21.3
2261 Male, age 18, unknown 21.1
1895 Male, age 76, right hemisphere 20.9
1796 Male, age 53, unknown 20.0
2587 Male, age 74, left hemisphere 18.0
1995 Male, age 72, unknown 16.9
1913 Female, age 42, unknown 16.7
Ventral tegmental area
nTPM: 18.3
1942 Male, age 51, unknown 19.3
2218 Male, age 76, both hemispheres 19.1
1915 Female, age 42, unknown 18.8
2410 Female, age 72, unknown 18.6
2223 Female, age 72, unknown 17.5
2021 Male, age 53, unknown 16.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 60.6
Min nTPM: 25.5
Std nTPM: 5.6
Median nTPM: 37.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 60.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 57.8
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 55.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 51.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 50.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 49.3
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 48.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 47.6
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 46.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 46.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 45.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 58.2
FF:10158-103A5 76 years, female 58.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 61.6
Pig sample Sample description nTPM
Midbrain
nTPM: 55.2
Samples: 4

Max nTPM: 67.6
Min nTPM: 45.3
Sample A Female 49.0
Sample B Female 45.3
Sample C Male 67.6
Sample D Male 58.7
Periaqueductal gray
nTPM: 51.0
Samples: 3

Max nTPM: 56.9
Min nTPM: 43.8
Sample B Female 43.8
Sample C Male 56.9
Sample D Male 52.2
Substantia nigra
nTPM: 55.6
Samples: 4

Max nTPM: 68.0
Min nTPM: 43.4
Sample A Female 62.9
Sample B Female 48.0
Sample C Male 68.0
Sample D Male 43.4
Superior colliculi
nTPM: 61.6
Samples: 4

Max nTPM: 74.1
Min nTPM: 45.0
Sample A Female 67.4
Sample B Female 45.0
Sample C Male 59.7
Sample D Male 74.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 40.6
Min nTPM: 37.3
Sample A Male 38.5
Sample B Male 40.6
Sample C Female 38.0
Sample D Female 37.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70303034 Antisense, RP_050609_01_D12, Mouse strain C57BL/6J (56 days, male) 3.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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