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CNIH2
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:74.6 nTPM
HPA:74.6 nTPM
GTEx:152.3 nTPM
FANTOM5:240.3 Scaled Tags Per Million
Mouse:306.6 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 74.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 52.7
2290 Female, age 72, unknown 70.3
2289 Male, age 61, right hemisphere 63.0
1857 Female, age 85, left hemisphere 54.5
2846 Female, age 79, unknown 52.5
2288 Male, age 75, left hemisphere 51.9
1781 Male, age 74, unknown 48.5
1854 Male, age 80, left hemisphere 46.8
2481 Female, age 94, left hemisphere 34.5
Claustrum
nTPM: 56.8
2645 Female, age 72, unknown 75.4
2568 Male, age 61, both hemispheres 75.2
2284 Female, age 91, both hemispheres 63.2
2491 Male, age 75, both hemispheres 56.1
2198 Male, age 80, both hemispheres 54.4
1956 Male, age 74, unknown 53.0
2196 Female, age 79, unknown 47.6
2292 Female, age 85, both hemispheres 45.0
2392 Female, age 94, both hemispheres 41.6
Globus pallidus, externus
nTPM: 20.1
2646 Male, age 61, right hemisphere 26.1
2567 Female, age 72, unknown 20.1
2395 Male, age 75, both hemispheres 18.7
2772 Female, age 79, unknown 18.6
1996 Male, age 80, right hemisphere 17.2
Globus pallidus, internus
nTPM: 19.0
2483 Female, age 94, right hemisphere 29.0
2566 Female, age 72, unknown 23.8
1818 Male, age 74, unknown 19.7
2037 Male, age 80, right hemisphere 18.6
2287 Male, age 75, right hemisphere 14.5
2778 Female, age 91, both hemispheres 14.3
2111 Female, age 85, right hemisphere 13.1
Nucleus accumbens
nTPM: 50.2
2698 Female, age 72, unknown 62.3
1856 Female, age 91, right hemisphere 62.1
1783 Male, age 74, unknown 61.5
2824 Male, age 61, right hemisphere 58.7
1806 Female, age 85, left hemisphere 48.8
2286 Male, age 75, left hemisphere 45.1
2732 Male, age 80, right hemisphere 38.3
2391 Female, age 94, left hemisphere 24.6
Nucleus basalis of Meynert
nTPM: 43.4
2821 Male, age 75, both hemispheres 47.1
2484 Female, age 94, left hemisphere 44.4
2569 Male, age 61, both hemispheres 42.0
2393 Male, age 80, right hemisphere 40.1
Nucleus of the diagonal band
nTPM: 72.9
2195 Female, age 85, both hemispheres 85.9
1979 Male, age 74, unknown 82.5
2775 Male, age 80, right hemisphere 70.4
2029 Male, age 61, right hemisphere 69.5
1812 Female, age 91, both hemispheres 56.2
Olfactory tubercle
nTPM: 66.5
2487 Female, age 94, left hemisphere 76.2
2856 Male, age 75, right hemisphere 69.0
1998 Female, age 91, both hemispheres 66.2
1846 Male, age 80, right hemisphere 54.6
Putamen
nTPM: 49.7
2647 Male, age 75, left hemisphere 57.7
2489 Female, age 72, unknown 55.7
1937 Female, age 91, right hemisphere 53.9
1838 Male, age 80, right hemisphere 53.6
1829 Male, age 74, unknown 45.8
2466 Female, age 79, unknown 41.1
2482 Female, age 94, left hemisphere 39.8
Septal nuclei
nTPM: 74.6
1960 Male, age 74, unknown 103.3
2059 Female, age 85, both hemispheres 82.9
2199 Male, age 80, right hemisphere 81.7
2629 Female, age 94, right hemisphere 76.4
2031 Female, age 72, unknown 62.6
2009 Female, age 91, both hemispheres 60.7
2394 Male, age 61, left hemisphere 54.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 152.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 120.6
Samples: 246

Max nTPM: 292.2
Min nTPM: 25.6
Std nTPM: 46.0
Median nTPM: 120.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 292.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 253.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 252.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 230.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 228.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 220.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 220.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 214.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 212.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 212.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 210.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 152.3
Samples: 246

Max nTPM: 284.8
Min nTPM: 15.6
Std nTPM: 54.2
Median nTPM: 150.6
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 284.8
GTEX-145LU-0011-R6a-SM-5S2V6 50-59 years, male 270.3
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 270.1
GTEX-1HBPH-0011-R6a-SM-CKZOV 40-49 years, female 268.4
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 266.4
GTEX-1H4P4-0011-R6a-SM-ARZLR 50-59 years, male 266.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 264.5
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 263.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 253.9
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 251.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 250.1
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Brain - Putamen (basal ganglia)
Average nTPM: 116.9
Samples: 205

Max nTPM: 262.5
Min nTPM: 19.4
Std nTPM: 48.9
Median nTPM: 114.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 262.5
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 229.8
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 225.1
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 214.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 214.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 213.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 212.8
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 212.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 208.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 205.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 204.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 240.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 155.6
FF:10164-103B2 76 years, female 155.6
Globus pallidus
Scaled Tags Per Million: 45.4
FF:10175-103C4 60 years, female 63.1
FF:10161-103A8 76 years, female 27.8
Nucleus accumbens
Scaled Tags Per Million: 188.5
FF:10037-101F1 23-56 years, mixed 188.5
Putamen
Scaled Tags Per Million: 240.3
FF:10176-103C5 60 years, female 240.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 306.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 247.2
Samples: 4

Max nTPM: 280.5
Min nTPM: 207.7
Sample A Male 237.5
Sample B Male 280.5
Sample C Female 207.7
Sample D Female 263.1
Septum
nTPM: 306.6
Samples: 4

Max nTPM: 396.1
Min nTPM: 230.2
Sample A Male 230.2
Sample B Male 396.1
Sample C Female 315.8
Sample D Female 284.4
Ventral forebrain
nTPM: 226.0
Samples: 4

Max nTPM: 297.6
Min nTPM: 180.5
Sample A Male 216.0
Sample B Male 180.5
Sample C Female 297.6
Sample D Female 209.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
2109 Antisense, RP_Baylor_102694, Mouse strain C57BL/6J (56 days, male) 2.5
2110 Antisense, RP_Baylor_102694, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 1.7
2109 Antisense, RP_Baylor_102694, Mouse strain C57BL/6J (56 days, male) 1.7
2110 Antisense, RP_Baylor_102694, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.