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ATG13
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.6 nTPM
HPA:67.6 nTPM
GTEx:46.7 nTPM
FANTOM5:87.6 Scaled Tags Per Million
Pig:35.7 nTPM
Mouse:44.0 nTPM
Allen mouse:4.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 67.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.2
2288 Male, age 75, left hemisphere 63.6
1781 Male, age 74, unknown 52.4
2290 Female, age 72, unknown 52.0
2846 Female, age 79, unknown 50.9
1857 Female, age 85, left hemisphere 48.1
2289 Male, age 61, right hemisphere 48.0
2481 Female, age 94, left hemisphere 47.4
1854 Male, age 80, left hemisphere 47.2
Claustrum
nTPM: 63.0
2292 Female, age 85, both hemispheres 72.2
2198 Male, age 80, both hemispheres 67.2
2284 Female, age 91, both hemispheres 65.5
2491 Male, age 75, both hemispheres 64.4
1956 Male, age 74, unknown 63.1
2568 Male, age 61, both hemispheres 62.8
2645 Female, age 72, unknown 62.6
2392 Female, age 94, both hemispheres 56.6
2196 Female, age 79, unknown 53.0
Globus pallidus, externus
nTPM: 66.5
2567 Female, age 72, unknown 83.0
2646 Male, age 61, right hemisphere 65.5
1996 Male, age 80, right hemisphere 63.3
2395 Male, age 75, both hemispheres 62.5
2772 Female, age 79, unknown 58.1
Globus pallidus, internus
nTPM: 67.6
2111 Female, age 85, right hemisphere 79.3
2566 Female, age 72, unknown 74.7
2778 Female, age 91, both hemispheres 73.8
2287 Male, age 75, right hemisphere 69.8
2037 Male, age 80, right hemisphere 63.3
1818 Male, age 74, unknown 56.7
2483 Female, age 94, right hemisphere 55.5
Nucleus accumbens
nTPM: 52.6
2286 Male, age 75, left hemisphere 57.0
2824 Male, age 61, right hemisphere 56.6
1783 Male, age 74, unknown 56.4
2391 Female, age 94, left hemisphere 55.5
2732 Male, age 80, right hemisphere 52.2
1806 Female, age 85, left hemisphere 51.7
2698 Female, age 72, unknown 48.0
1856 Female, age 91, right hemisphere 43.4
Nucleus basalis of Meynert
nTPM: 54.8
2569 Male, age 61, both hemispheres 64.6
2821 Male, age 75, both hemispheres 52.8
2484 Female, age 94, left hemisphere 51.0
2393 Male, age 80, right hemisphere 50.6
Nucleus of the diagonal band
nTPM: 51.3
2029 Male, age 61, right hemisphere 65.5
1812 Female, age 91, both hemispheres 50.0
2775 Male, age 80, right hemisphere 49.2
1979 Male, age 74, unknown 46.5
2195 Female, age 85, both hemispheres 45.6
Olfactory tubercle
nTPM: 50.3
2487 Female, age 94, left hemisphere 54.9
1998 Female, age 91, both hemispheres 53.5
1846 Male, age 80, right hemisphere 46.7
2856 Male, age 75, right hemisphere 46.1
Putamen
nTPM: 56.7
2647 Male, age 75, left hemisphere 65.4
1829 Male, age 74, unknown 61.7
2489 Female, age 72, unknown 60.7
2466 Female, age 79, unknown 56.9
1937 Female, age 91, right hemisphere 53.2
1838 Male, age 80, right hemisphere 49.6
2482 Female, age 94, left hemisphere 49.3
Septal nuclei
nTPM: 48.6
2059 Female, age 85, both hemispheres 52.1
2394 Male, age 61, left hemisphere 51.9
1960 Male, age 74, unknown 51.8
2031 Female, age 72, unknown 50.6
2009 Female, age 91, both hemispheres 46.9
2629 Female, age 94, right hemisphere 46.9
2199 Male, age 80, right hemisphere 39.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 46.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.5
Samples: 246

Max nTPM: 68.1
Min nTPM: 26.7
Std nTPM: 7.2
Median nTPM: 42.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 68.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 67.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 61.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 56.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 56.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 56.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 56.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 55.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 55.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 54.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 54.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 41.9
Samples: 246

Max nTPM: 63.0
Min nTPM: 18.6
Std nTPM: 6.2
Median nTPM: 42.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 63.0
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 59.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 56.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 56.3
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 54.8
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 54.0
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 53.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 53.3
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 53.3
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 52.5
GTEX-1ICLZ-0011-R6b-SM-A9G3A 60-69 years, male 52.5
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Brain - Putamen (basal ganglia)
Average nTPM: 46.7
Samples: 205

Max nTPM: 75.3
Min nTPM: 27.3
Std nTPM: 7.9
Median nTPM: 46.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 75.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 70.3
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 67.4
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 66.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 63.9
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 61.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 60.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 60.4
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 60.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 59.9
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 59.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 87.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 55.7
FF:10164-103B2 76 years, female 55.7
Globus pallidus
Scaled Tags Per Million: 75.0
FF:10161-103A8 76 years, female 97.9
FF:10175-103C4 60 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 87.6
FF:10037-101F1 23-56 years, mixed 87.6
Putamen
Scaled Tags Per Million: 61.8
FF:10176-103C5 60 years, female 61.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.7
Pig sample Sample description nTPM
Caudate
nTPM: 31.1
Samples: 4

Max nTPM: 37.0
Min nTPM: 26.1
Sample A Female 26.1
Sample B Female 30.4
Sample C Male 37.0
Sample D Male 30.7
Putamen
nTPM: 35.7
Samples: 4

Max nTPM: 43.7
Min nTPM: 28.7
Sample A Female 28.7
Sample B Female 31.1
Sample C Male 43.7
Sample D Male 39.1
Septum
nTPM: 28.5
Samples: 4

Max nTPM: 30.8
Min nTPM: 27.0
Sample A Female 27.9
Sample B Female 28.3
Sample C Male 30.8
Sample D Male 27.0
Ventral pallidum
nTPM: 31.2
Samples: 4

Max nTPM: 35.2
Min nTPM: 25.6
Sample A Female 25.6
Sample B Female 31.3
Sample C Male 35.2
Sample D Male 32.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 44.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 44.1
Samples: 4

Max nTPM: 46.1
Min nTPM: 41.6
Sample A Male 45.6
Sample B Male 46.1
Sample C Female 41.6
Sample D Female 42.9
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 37.7
Min nTPM: 34.5
Sample A Male 37.7
Sample B Male 34.5
Sample C Female 34.7
Sample D Female 35.0
Ventral forebrain
nTPM: 39.8
Samples: 4

Max nTPM: 40.3
Min nTPM: 39.0
Sample A Male 40.3
Sample B Male 39.7
Sample C Female 39.0
Sample D Female 40.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.6
68158078 Antisense, RP_041116_02_G07, Mouse strain C57BL/6J (56 days, male) 4.6
Pallidum
Expression energy: 3.3
68158078 Antisense, RP_041116_02_G07, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.