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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.1 nTPM
HPA:11.1 nTPM
GTEx:39.6 nTPM
FANTOM5:44.3 Scaled Tags Per Million
Pig:10.6 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.0
2666 Male, age 74, left hemisphere 9.7
2586 Male, age 75, left hemisphere 9.1
1827 Male, age 72, unknown 8.9
2219 Male, age 76, both hemispheres 8.9
2411 Female, age 72, unknown 7.6
2828 Female, age 72, unknown 7.6
2019 Male, age 18, unknown 7.5
1830 Male, age 51, unknown 7.3
1870 Female, age 42, unknown 7.1
1833 Male, age 53, unknown 6.7
Dorsal raphe nucleus
nTPM: 8.8
2750 Male, age 76, both hemispheres 10.2
2298 Female, age 72, unknown 8.7
2047 Male, age 72, unknown 8.6
1828 Male, age 53, unknown 8.3
2016 Female, age 72, unknown 8.0
Inferior colliculus
nTPM: 7.6
1890 Male, age 53, unknown 8.3
1848 Female, age 42, unknown 7.6
2849 Male, age 72, unknown 7.5
2097 Female, age 72, unknown 6.8
Median raphe nucleus
nTPM: 11.1
2220 Male, age 76, midline 11.1
Pedunculopontine tegmental nucleus
nTPM: 10.1
2338 Male, age 61, both hemispheres 15.3
2334 Male, age 80, both hemispheres 8.8
1921 Female, age 85, both hemispheres 6.3
Periaquaductal grey, anterior
nTPM: 7.9
2502 Female, age 75, unknown 8.7
1947 Male, age 18, unknown 8.0
1795 Male, age 51, unknown 7.1
Periaquaductal grey, dorsal
nTPM: 8.0
2464 Female, age 72, unknown 8.7
1831 Male, age 72, unknown 8.0
2850 Male, age 76, both hemispheres 7.8
1840 Male, age 53, unknown 7.5
Periaquaductal grey, lateral
nTPM: 7.6
2140 Male, age 76, both hemispheres 8.5
2272 Male, age 74, both hemispheres 7.5
2053 Male, age 18, unknown 6.8
Pretectal area
nTPM: 8.4
1816 Male, age 51, unknown 10.7
1815 Male, age 53, unknown 10.0
2407 Male, age 75, both hemispheres 8.7
2667 Female, age 75, unknown 8.6
2007 Male, age 72, unknown 8.5
1817 Female, age 42, unknown 8.4
2273 Male, age 74, both hemispheres 8.2
2825 Male, age 18, unknown 8.2
2224 Female, age 72, unknown 8.1
1944 Female, age 72, unknown 7.8
2316 Male, age 76, right hemisphere 5.2
Red nucleus
nTPM: 7.9
2785 Male, age 18, unknown 9.1
2769 Male, age 72, unknown 8.9
2503 Female, age 72, unknown 8.6
2823 Male, age 76, right hemisphere 8.4
1821 Female, age 72, unknown 8.3
2725 Female, age 75, unknown 8.2
1904 Male, age 53, unknown 7.9
2227 Male, age 72, unknown 7.6
1865 Male, age 51, unknown 7.5
2584 Male, age 75, left hemisphere 7.3
1954 Female, age 42, unknown 6.6
2588 Male, age 74, left hemisphere 6.3
Substantia nigra
nTPM: 8.7
1916 Female, age 42, unknown 11.1
2665 Male, age 74, both hemispheres 9.8
1941 Male, age 53, unknown 9.7
1851 Male, age 51, unknown 9.4
2699 Male, age 18, unknown 9.2
2583 Male, age 75, right hemisphere 8.8
2590 Female, age 75, unknown 8.6
2241 Male, age 72, unknown 8.1
1889 Female, age 72, unknown 6.4
2409 Female, age 72, unknown 5.7
Superior colliculus
nTPM: 8.4
2664 Male, age 75, both hemispheres 12.3
2087 Female, age 72, unknown 9.1
1913 Female, age 42, unknown 8.8
2587 Male, age 74, left hemisphere 8.5
1895 Male, age 76, right hemisphere 8.2
1839 Male, age 51, unknown 8.0
2261 Male, age 18, unknown 7.9
1995 Male, age 72, unknown 7.3
1796 Male, age 53, unknown 7.1
2668 Female, age 75, unknown 6.9
Ventral tegmental area
nTPM: 8.9
1915 Female, age 42, unknown 10.3
2218 Male, age 76, both hemispheres 10.2
2021 Male, age 53, unknown 9.1
2223 Female, age 72, unknown 9.0
1942 Male, age 51, unknown 8.2
2410 Female, age 72, unknown 6.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.6
Samples: 139

Max nTPM: 121.9
Min nTPM: 15.9
Std nTPM: 12.8
Median nTPM: 37.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 121.9
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 76.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 75.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 68.4
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 67.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 61.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 61.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 58.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 58.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 58.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 57.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.3
FF:10158-103A5 76 years, female 44.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.6
Pig sample Sample description nTPM
Midbrain
nTPM: 9.3
Samples: 4

Max nTPM: 12.1
Min nTPM: 7.5
Sample A Female 12.1
Sample B Female 9.6
Sample C Male 7.9
Sample D Male 7.5
Periaqueductal gray
nTPM: 8.6
Samples: 3

Max nTPM: 9.8
Min nTPM: 8.0
Sample B Female 8.0
Sample C Male 9.8
Sample D Male 8.1
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 9.4
Sample A Female 12.6
Sample B Female 10.4
Sample C Male 10.0
Sample D Male 9.4
Superior colliculi
nTPM: 10.3
Samples: 4

Max nTPM: 11.4
Min nTPM: 9.1
Sample A Female 11.2
Sample B Female 11.4
Sample C Male 9.4
Sample D Male 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.