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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:71.3 nTPM
HPA:71.3 nTPM
GTEx:72.1 nTPM
FANTOM5:66.3 Scaled Tags Per Million
Mouse:105.6 nTPM
Allen mouse:0.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048712
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 71.3
Sample id Sample description nTPM
Hippocampus
nTPM: 68.7
1898 Male, age 80, left hemisphere 74.1
2621 Female, age 67, right hemisphere 69.3
1855 Male, age 76, left hemisphere 68.8
1911 Female, age 85, right hemisphere 67.5
2529 Female, age 94, left hemisphere 67.1
2148 Female, age 91, left hemisphere 65.2
Dentate gyrus
nTPM: 67.8
1927 Female, age 91, both hemispheres 71.1
2010 Male, age 76, both hemispheres 71.1
2528 Male, age 74, both hemispheres 67.3
2246 Female, age 85, both hemispheres 66.1
2530 Female, age 94, left hemisphere 66.1
2531 Female, age 67, both hemispheres 65.2
Entorhinal gyrus
nTPM: 67.0
1938 Female, age 85, left hemisphere 70.0
2764 Male, age 80, right hemisphere 69.9
1787 Male, age 76, left hemisphere 66.9
2117 Female, age 91, right hemisphere 65.8
2686 Male, age 75, right hemisphere 65.0
2613 Female, age 94, left hemisphere 64.2
Hippocampus, CA1
nTPM: 70.3
2749 Male, age 80, left hemisphere 77.9
1873 Female, age 85, both hemispheres 72.7
2527 Male, age 74, both hemispheres 68.6
2045 Male, age 76, both hemispheres 67.0
2082 Female, age 91, right hemisphere 65.3
Hippocampus, CA2
nTPM: 69.7
1892 Male, age 76, both hemispheres 75.2
1963 Male, age 80, left hemisphere 73.7
2249 Male, age 74, both hemispheres 71.8
1940 Female, age 85, left hemisphere 66.8
2437 Female, age 94, left hemisphere 65.9
2113 Female, age 91, right hemisphere 64.7
Hippocampus, CA3
nTPM: 68.8
2137 Male, age 80, left hemisphere 74.7
1867 Male, age 76, both hemispheres 73.1
2436 Male, age 74, both hemispheres 68.9
1891 Female, age 85, both hemispheres 67.6
2620 Female, age 94, left hemisphere 65.6
2861 Female, age 67, both hemispheres 62.7
Parahippocampal cortex
nTPM: 68.2
1850 Male, age 80, both hemispheres 72.3
1933 Female, age 85, both hemispheres 70.4
2250 Female, age 67, right hemisphere 69.8
1990 Female, age 91, right hemisphere 69.4
2018 Male, age 76, both hemispheres 69.0
2245 Female, age 91, both hemispheres 67.6
2693 Female, age 94, both hemispheres 67.4
2532 Female, age 72, left hemisphere 66.1
2622 Female, age 67, right hemisphere 65.1
2692 Male, age 74, both hemispheres 64.8
Perirhinal gyrus
nTPM: 71.3
1847 Female, age 91, left hemisphere 74.9
1841 Female, age 85, right hemisphere 74.0
1794 Male, age 80, right hemisphere 71.6
2521 Female, age 94, right hemisphere 68.0
2848 Male, age 76, right hemisphere 68.0
Subiculum
nTPM: 67.7
1977 Female, age 85, both hemispheres 70.2
1901 Male, age 80, both hemispheres 69.5
2042 Male, age 76, both hemispheres 67.7
2438 Female, age 94, left hemisphere 66.8
2619 Male, age 74, both hemispheres 66.2
2729 Female, age 91, right hemisphere 65.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 72.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 72.1
Samples: 197

Max nTPM: 218.8
Min nTPM: 38.2
Std nTPM: 21.7
Median nTPM: 67.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 218.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 149.2
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 117.7
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 114.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 114.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 113.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 111.5
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 109.9
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 108.8
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 108.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 107.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 66.3
FF:10169-103B7 60 years, female 77.4
FF:10153-102I9 76 years, female 55.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 105.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 95.0
Samples: 4

Max nTPM: 103.8
Min nTPM: 84.9
Sample A Male 98.1
Sample B Male 93.3
Sample C Female 103.8
Sample D Female 84.9
Hippocampal formation
nTPM: 105.6
Samples: 4

Max nTPM: 125.9
Min nTPM: 89.1
Sample A Male 125.9
Sample B Male 107.5
Sample C Female 89.1
Sample D Female 99.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.1
69352932 Antisense, RP_050412_01_D10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.