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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:16.2 nTPM
FANTOM5:46.8 Scaled Tags Per Million
Pig:6.8 nTPM
Mouse:21.1 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.8
2290 Female, age 72, unknown 13.5
1781 Male, age 74, unknown 13.2
2289 Male, age 61, right hemisphere 13.2
2846 Female, age 79, unknown 13.1
2288 Male, age 75, left hemisphere 12.8
1857 Female, age 85, left hemisphere 11.6
1854 Male, age 80, left hemisphere 9.2
2481 Female, age 94, left hemisphere 7.7
Claustrum
nTPM: 13.5
2645 Female, age 72, unknown 18.1
2284 Female, age 91, both hemispheres 17.8
2568 Male, age 61, both hemispheres 16.3
2198 Male, age 80, both hemispheres 13.5
2491 Male, age 75, both hemispheres 13.1
1956 Male, age 74, unknown 12.0
2196 Female, age 79, unknown 11.3
2292 Female, age 85, both hemispheres 10.6
2392 Female, age 94, both hemispheres 9.3
Globus pallidus, externus
nTPM: 7.9
2567 Female, age 72, unknown 9.7
2646 Male, age 61, right hemisphere 9.6
2772 Female, age 79, unknown 8.5
2395 Male, age 75, both hemispheres 6.2
1996 Male, age 80, right hemisphere 5.6
Globus pallidus, internus
nTPM: 6.6
1818 Male, age 74, unknown 7.5
2287 Male, age 75, right hemisphere 7.4
2566 Female, age 72, unknown 7.4
2483 Female, age 94, right hemisphere 6.7
2778 Female, age 91, both hemispheres 6.0
2037 Male, age 80, right hemisphere 5.9
2111 Female, age 85, right hemisphere 5.6
Nucleus accumbens
nTPM: 10.2
1783 Male, age 74, unknown 12.9
1806 Female, age 85, left hemisphere 11.5
1856 Female, age 91, right hemisphere 11.0
2824 Male, age 61, right hemisphere 10.8
2286 Male, age 75, left hemisphere 10.6
2698 Female, age 72, unknown 10.3
2732 Male, age 80, right hemisphere 7.5
2391 Female, age 94, left hemisphere 7.1
Nucleus basalis of Meynert
nTPM: 10.2
2484 Female, age 94, left hemisphere 12.2
2569 Male, age 61, both hemispheres 10.0
2821 Male, age 75, both hemispheres 10.0
2393 Male, age 80, right hemisphere 8.6
Nucleus of the diagonal band
nTPM: 13.8
2029 Male, age 61, right hemisphere 16.4
2195 Female, age 85, both hemispheres 15.4
2775 Male, age 80, right hemisphere 14.7
1812 Female, age 91, both hemispheres 12.3
1979 Male, age 74, unknown 9.9
Olfactory tubercle
nTPM: 14.6
2856 Male, age 75, right hemisphere 16.5
1998 Female, age 91, both hemispheres 15.3
2487 Female, age 94, left hemisphere 15.3
1846 Male, age 80, right hemisphere 11.3
Putamen
nTPM: 11.7
2489 Female, age 72, unknown 13.7
2647 Male, age 75, left hemisphere 13.5
1829 Male, age 74, unknown 12.6
2466 Female, age 79, unknown 12.0
1838 Male, age 80, right hemisphere 11.0
1937 Female, age 91, right hemisphere 10.4
2482 Female, age 94, left hemisphere 9.1
Septal nuclei
nTPM: 12.2
1960 Male, age 74, unknown 16.7
2629 Female, age 94, right hemisphere 14.1
2059 Female, age 85, both hemispheres 13.1
2031 Female, age 72, unknown 12.9
2009 Female, age 91, both hemispheres 11.0
2394 Male, age 61, left hemisphere 9.6
2199 Male, age 80, right hemisphere 7.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 16.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 14.4
Samples: 246

Max nTPM: 28.5
Min nTPM: 4.7
Std nTPM: 4.6
Median nTPM: 14.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 28.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 27.7
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 27.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 25.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 25.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 25.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 25.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 24.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 23.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 23.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 23.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 16.2
Samples: 246

Max nTPM: 30.8
Min nTPM: 4.1
Std nTPM: 4.6
Median nTPM: 16.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 30.8
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 28.4
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 27.0
GTEX-12WSC-0011-R6b-SM-5LU99 50-59 years, male 26.6
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 25.9
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 25.2
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 25.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 24.8
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 24.7
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 24.7
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 24.1
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Brain - Putamen (basal ganglia)
Average nTPM: 14.9
Samples: 205

Max nTPM: 28.1
Min nTPM: 5.6
Std nTPM: 4.9
Median nTPM: 14.3
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 28.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 27.5
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 26.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 25.8
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 25.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 25.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 24.6
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 24.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 24.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 24.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 23.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 46.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 27.8
FF:10164-103B2 76 years, female 27.8
Globus pallidus
Scaled Tags Per Million: 33.7
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 33.6
Nucleus accumbens
Scaled Tags Per Million: 46.8
FF:10037-101F1 23-56 years, mixed 46.8
Putamen
Scaled Tags Per Million: 34.1
FF:10176-103C5 60 years, female 34.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 6.8
Pig sample Sample description nTPM
Caudate
nTPM: 6.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 6.9
Sample C Male 8.7
Sample D Male 5.7
Putamen
nTPM: 6.8
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.9
Sample C Male 8.2
Sample D Male 8.0
Septum
nTPM: 6.1
Samples: 4

Max nTPM: 6.9
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 5.7
Sample C Male 6.4
Sample D Male 6.9
Ventral pallidum
nTPM: 6.2
Samples: 4

Max nTPM: 8.1
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 6.6
Sample C Male 8.1
Sample D Male 5.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 19.2
Samples: 4

Max nTPM: 22.7
Min nTPM: 16.3
Sample A Male 19.2
Sample B Male 22.7
Sample C Female 16.3
Sample D Female 18.7
Septum
nTPM: 21.1
Samples: 4

Max nTPM: 23.0
Min nTPM: 19.6
Sample A Male 19.6
Sample B Male 23.0
Sample C Female 21.5
Sample D Female 20.1
Ventral forebrain
nTPM: 20.2
Samples: 4

Max nTPM: 23.8
Min nTPM: 16.2
Sample A Male 20.0
Sample B Male 20.6
Sample C Female 23.8
Sample D Female 16.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
73423887 Antisense, RP_051019_03_B06, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.9
73423887 Antisense, RP_051019_03_B06, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.