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HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.0 nTPM
HPA:77.0 nTPM
GTEx:48.9 nTPM
FANTOM5:78.7 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:70.7 nTPM
Allen mouse:3.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 77.0
Sample id Sample description nTPM
Hippocampus
nTPM: 63.6
2529 Female, age 94, left hemisphere 73.3
1911 Female, age 85, right hemisphere 71.7
1898 Male, age 80, left hemisphere 62.2
2621 Female, age 67, right hemisphere 60.0
2148 Female, age 91, left hemisphere 59.0
1855 Male, age 76, left hemisphere 55.1
Dentate gyrus
nTPM: 64.4
2530 Female, age 94, left hemisphere 82.9
2010 Male, age 76, both hemispheres 67.2
2528 Male, age 74, both hemispheres 65.1
2246 Female, age 85, both hemispheres 61.3
2531 Female, age 67, both hemispheres 56.0
1927 Female, age 91, both hemispheres 53.5
Entorhinal gyrus
nTPM: 72.0
2117 Female, age 91, right hemisphere 89.3
2764 Male, age 80, right hemisphere 84.8
1938 Female, age 85, left hemisphere 65.9
1787 Male, age 76, left hemisphere 64.6
2613 Female, age 94, left hemisphere 64.1
2686 Male, age 75, right hemisphere 63.4
Hippocampus, CA1
nTPM: 57.2
2082 Female, age 91, right hemisphere 68.6
2527 Male, age 74, both hemispheres 59.3
1873 Female, age 85, both hemispheres 58.4
2749 Male, age 80, left hemisphere 54.1
2045 Male, age 76, both hemispheres 45.3
Hippocampus, CA2
nTPM: 66.0
1963 Male, age 80, left hemisphere 74.9
2113 Female, age 91, right hemisphere 68.9
2437 Female, age 94, left hemisphere 68.0
2249 Male, age 74, both hemispheres 66.3
1940 Female, age 85, left hemisphere 64.1
1892 Male, age 76, both hemispheres 53.8
Hippocampus, CA3
nTPM: 56.3
1891 Female, age 85, both hemispheres 78.6
1867 Male, age 76, both hemispheres 62.3
2436 Male, age 74, both hemispheres 55.1
2137 Male, age 80, left hemisphere 48.9
2861 Female, age 67, both hemispheres 47.0
2620 Female, age 94, left hemisphere 45.7
Parahippocampal cortex
nTPM: 62.6
2692 Male, age 74, both hemispheres 71.8
1990 Female, age 91, right hemisphere 71.7
2532 Female, age 72, left hemisphere 70.7
2018 Male, age 76, both hemispheres 67.9
1933 Female, age 85, both hemispheres 63.8
2245 Female, age 91, both hemispheres 60.7
1850 Male, age 80, both hemispheres 60.6
2693 Female, age 94, both hemispheres 54.4
2622 Female, age 67, right hemisphere 52.3
2250 Female, age 67, right hemisphere 51.8
Perirhinal gyrus
nTPM: 53.7
2521 Female, age 94, right hemisphere 56.3
2848 Male, age 76, right hemisphere 55.9
1794 Male, age 80, right hemisphere 54.4
1847 Female, age 91, left hemisphere 52.8
1841 Female, age 85, right hemisphere 49.1
Subiculum
nTPM: 77.0
2042 Male, age 76, both hemispheres 92.2
1901 Male, age 80, both hemispheres 87.6
1977 Female, age 85, both hemispheres 80.7
2619 Male, age 74, both hemispheres 69.3
2438 Female, age 94, left hemisphere 69.0
2729 Female, age 91, right hemisphere 63.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 48.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 48.9
Samples: 197

Max nTPM: 190.0
Min nTPM: 8.8
Std nTPM: 31.8
Median nTPM: 40.6
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 190.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 173.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 145.2
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 144.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 135.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 133.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 133.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 119.0
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 113.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 113.3
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 112.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 78.7
FF:10153-102I9 76 years, female 114.5
FF:10169-103B7 60 years, female 42.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.4
Samples: 4

Max nTPM: 13.3
Min nTPM: 7.4
Sample A Female 13.3
Sample B Female 9.2
Sample C Male 7.5
Sample D Male 7.4
Entorhinal cortex
nTPM: 8.5
Samples: 4

Max nTPM: 11.6
Min nTPM: 6.1
Sample A Female 8.2
Sample B Female 6.1
Sample C Male 11.6
Sample D Male 8.1
Subiculum
nTPM: 8.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.1
Sample A Female 12.2
Sample B Female 7.1
Sample C Male 7.6
Sample D Male 8.1
Ventral hippocampus
nTPM: 9.0
Samples: 4

Max nTPM: 10.6
Min nTPM: 5.7
Sample A Female 9.4
Sample B Female 5.7
Sample C Male 10.3
Sample D Male 10.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 70.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.8
Samples: 4

Max nTPM: 23.9
Min nTPM: 15.5
Sample A Male 22.5
Sample B Male 21.2
Sample C Female 23.9
Sample D Female 15.5
Hippocampal formation
nTPM: 70.7
Samples: 4

Max nTPM: 95.8
Min nTPM: 57.0
Sample A Male 57.0
Sample B Male 63.4
Sample C Female 95.8
Sample D Female 66.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.3
68744887 Antisense, RP_050208_01_H01, Mouse strain C57BL/6J (56 days, male) 4.4
71064032 Antisense, RP_050725_03_C08, Mouse strain C57BL/6J (56 days, male) 2.1

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