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CDK5R1
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:50.8 nTPM
HPA:50.8 nTPM
GTEx:32.5 nTPM
FANTOM5:137.7 Scaled Tags Per Million
Pig:122.3 nTPM
Mouse:141.9 nTPM
Allen mouse:4.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 50.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.6
1781 Male, age 74, unknown 19.7
1857 Female, age 85, left hemisphere 16.0
2288 Male, age 75, left hemisphere 13.8
2289 Male, age 61, right hemisphere 11.5
2846 Female, age 79, unknown 10.8
2290 Female, age 72, unknown 9.6
1854 Male, age 80, left hemisphere 9.5
2481 Female, age 94, left hemisphere 1.8
Claustrum
nTPM: 27.1
2491 Male, age 75, both hemispheres 44.2
2568 Male, age 61, both hemispheres 39.1
2284 Female, age 91, both hemispheres 37.6
2198 Male, age 80, both hemispheres 27.9
2645 Female, age 72, unknown 25.1
2392 Female, age 94, both hemispheres 24.6
1956 Male, age 74, unknown 22.3
2196 Female, age 79, unknown 11.8
2292 Female, age 85, both hemispheres 10.9
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 12.0
1856 Female, age 91, right hemisphere 24.4
1783 Male, age 74, unknown 19.7
1806 Female, age 85, left hemisphere 16.1
2824 Male, age 61, right hemisphere 16.1
2286 Male, age 75, left hemisphere 10.5
2732 Male, age 80, right hemisphere 5.0
2698 Female, age 72, unknown 4.5
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 4.7
2484 Female, age 94, left hemisphere 13.1
2393 Male, age 80, right hemisphere 4.6
2821 Male, age 75, both hemispheres 1.1
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 44.0
2029 Male, age 61, right hemisphere 61.3
2775 Male, age 80, right hemisphere 49.0
1812 Female, age 91, both hemispheres 47.3
2195 Female, age 85, both hemispheres 39.7
1979 Male, age 74, unknown 22.5
Olfactory tubercle
nTPM: 50.8
1998 Female, age 91, both hemispheres 53.9
2487 Female, age 94, left hemisphere 52.9
2856 Male, age 75, right hemisphere 51.1
1846 Male, age 80, right hemisphere 45.5
Putamen
nTPM: 9.5
1937 Female, age 91, right hemisphere 15.1
1838 Male, age 80, right hemisphere 13.8
2466 Female, age 79, unknown 12.6
2647 Male, age 75, left hemisphere 11.2
1829 Male, age 74, unknown 8.7
2489 Female, age 72, unknown 3.1
2482 Female, age 94, left hemisphere 2.0
Septal nuclei
nTPM: 33.2
1960 Male, age 74, unknown 51.4
2031 Female, age 72, unknown 51.2
2629 Female, age 94, right hemisphere 46.0
2009 Female, age 91, both hemispheres 37.6
2059 Female, age 85, both hemispheres 24.0
2394 Male, age 61, left hemisphere 13.2
2199 Male, age 80, right hemisphere 8.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 32.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.9
Samples: 246

Max nTPM: 99.0
Min nTPM: 3.6
Std nTPM: 12.2
Median nTPM: 24.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 99.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 57.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 48.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 47.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 47.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 47.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 46.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 46.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 45.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 45.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 45.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.5
Samples: 246

Max nTPM: 61.8
Min nTPM: 4.5
Std nTPM: 13.4
Median nTPM: 35.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 61.8
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 58.1
GTEX-15RJE-0011-R6a-SM-7DHL8 40-49 years, male 57.8
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 57.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 57.1
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 57.0
GTEX-17EVP-0011-R6b-SM-7LT99 40-49 years, male 55.9
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 55.4
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 54.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 53.6
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 52.6
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Brain - Putamen (basal ganglia)
Average nTPM: 22.2
Samples: 205

Max nTPM: 56.5
Min nTPM: 3.6
Std nTPM: 10.7
Median nTPM: 22.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 56.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 46.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 44.8
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 44.3
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 41.8
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 41.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 41.2
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 41.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 40.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 39.9
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 39.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 78.2
FF:10164-103B2 76 years, female 78.2
Globus pallidus
Scaled Tags Per Million: 40.5
FF:10175-103C4 60 years, female 62.3
FF:10161-103A8 76 years, female 18.7
Nucleus accumbens
Scaled Tags Per Million: 137.7
FF:10037-101F1 23-56 years, mixed 137.7
Putamen
Scaled Tags Per Million: 105.4
FF:10176-103C5 60 years, female 105.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 122.3
Pig sample Sample description nTPM
Caudate
nTPM: 122.3
Samples: 4

Max nTPM: 153.8
Min nTPM: 100.7
Sample A Female 100.7
Sample B Female 125.3
Sample C Male 153.8
Sample D Male 109.4
Putamen
nTPM: 99.8
Samples: 4

Max nTPM: 128.9
Min nTPM: 50.3
Sample A Female 50.3
Sample B Female 99.8
Sample C Male 128.9
Sample D Male 120.2
Septum
nTPM: 77.8
Samples: 4

Max nTPM: 102.0
Min nTPM: 53.3
Sample A Female 102.0
Sample B Female 100.9
Sample C Male 53.3
Sample D Male 55.0
Ventral pallidum
nTPM: 96.3
Samples: 4

Max nTPM: 108.4
Min nTPM: 80.8
Sample A Female 101.4
Sample B Female 108.4
Sample C Male 80.8
Sample D Male 94.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 141.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 141.9
Samples: 4

Max nTPM: 147.9
Min nTPM: 132.3
Sample A Male 147.9
Sample B Male 147.9
Sample C Female 132.3
Sample D Female 139.5
Septum
nTPM: 121.1
Samples: 4

Max nTPM: 140.9
Min nTPM: 107.5
Sample A Male 107.5
Sample B Male 140.9
Sample C Female 122.1
Sample D Female 114.0
Ventral forebrain
nTPM: 138.1
Samples: 4

Max nTPM: 149.6
Min nTPM: 128.3
Sample A Male 136.4
Sample B Male 128.3
Sample C Female 149.6
Sample D Female 137.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.0
248 Antisense, RP_Baylor_102683, Mouse strain C57BL/6J (56 days, male) 6.1
247 Antisense, RP_Baylor_102683, Mouse strain C57BL/6J (56 days, male) 5.5
249 Sense, RPS_Baylor_36965, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 4.6
248 Antisense, RP_Baylor_102683, Mouse strain C57BL/6J (56 days, male) 4.6
247 Antisense, RP_Baylor_102683, Mouse strain C57BL/6J (56 days, male) 2.4

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.