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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.9 nTPM
HPA:43.9 nTPM
GTEx:51.9 nTPM
FANTOM5:84.6 Scaled Tags Per Million
Mouse:98.3 nTPM
Allen mouse:3.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.8
2411 Female, age 72, unknown 40.7
2219 Male, age 76, both hemispheres 37.1
1870 Female, age 42, unknown 36.3
1827 Male, age 72, unknown 36.0
2019 Male, age 18, unknown 34.9
1833 Male, age 53, unknown 33.3
2828 Female, age 72, unknown 32.1
1830 Male, age 51, unknown 31.7
2666 Male, age 74, left hemisphere 28.7
2586 Male, age 75, left hemisphere 27.3
Dorsal raphe nucleus
nTPM: 39.0
2298 Female, age 72, unknown 47.1
2047 Male, age 72, unknown 41.1
2750 Male, age 76, both hemispheres 38.8
1828 Male, age 53, unknown 37.4
2016 Female, age 72, unknown 30.6
Inferior colliculus
nTPM: 36.5
2097 Female, age 72, unknown 39.0
1848 Female, age 42, unknown 37.6
1890 Male, age 53, unknown 35.5
2849 Male, age 72, unknown 33.9
Median raphe nucleus
nTPM: 43.9
2220 Male, age 76, midline 43.9
Pedunculopontine tegmental nucleus
nTPM: 40.8
2334 Male, age 80, both hemispheres 43.8
1921 Female, age 85, both hemispheres 42.3
2338 Male, age 61, both hemispheres 36.3
Periaquaductal grey, anterior
nTPM: 39.8
1947 Male, age 18, unknown 42.9
1795 Male, age 51, unknown 38.5
2502 Female, age 75, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 35.2
1840 Male, age 53, unknown 37.8
2850 Male, age 76, both hemispheres 36.8
2464 Female, age 72, unknown 33.8
1831 Male, age 72, unknown 32.5
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 42.3
2053 Male, age 18, unknown 34.9
2140 Male, age 76, both hemispheres 33.1
Pretectal area
nTPM: 38.5
2273 Male, age 74, both hemispheres 42.9
1817 Female, age 42, unknown 42.8
1944 Female, age 72, unknown 42.6
1816 Male, age 51, unknown 42.0
2007 Male, age 72, unknown 40.0
2224 Female, age 72, unknown 38.8
2667 Female, age 75, unknown 38.7
1815 Male, age 53, unknown 38.3
2825 Male, age 18, unknown 33.2
2407 Male, age 75, both hemispheres 33.1
2316 Male, age 76, right hemisphere 31.5
Red nucleus
nTPM: 31.2
2725 Female, age 75, unknown 38.7
1821 Female, age 72, unknown 36.7
2785 Male, age 18, unknown 32.4
1904 Male, age 53, unknown 30.6
2584 Male, age 75, left hemisphere 30.2
1954 Female, age 42, unknown 30.1
2227 Male, age 72, unknown 30.0
2769 Male, age 72, unknown 30.0
1865 Male, age 51, unknown 29.9
2503 Female, age 72, unknown 29.2
2588 Male, age 74, left hemisphere 28.4
2823 Male, age 76, right hemisphere 28.0
Substantia nigra
nTPM: 42.1
1916 Female, age 42, unknown 55.8
2241 Male, age 72, unknown 51.2
1941 Male, age 53, unknown 46.6
1889 Female, age 72, unknown 44.9
1851 Male, age 51, unknown 43.5
2409 Female, age 72, unknown 39.4
2699 Male, age 18, unknown 38.2
2590 Female, age 75, unknown 35.0
2665 Male, age 74, both hemispheres 35.0
2583 Male, age 75, right hemisphere 31.6
Superior colliculus
nTPM: 33.8
2261 Male, age 18, unknown 37.4
2087 Female, age 72, unknown 37.3
2587 Male, age 74, left hemisphere 37.3
1796 Male, age 53, unknown 36.3
1895 Male, age 76, right hemisphere 36.2
1839 Male, age 51, unknown 35.2
2668 Female, age 75, unknown 32.8
1913 Female, age 42, unknown 30.9
1995 Male, age 72, unknown 28.7
2664 Male, age 75, both hemispheres 26.3
Ventral tegmental area
nTPM: 41.7
2218 Male, age 76, both hemispheres 49.4
2410 Female, age 72, unknown 46.8
1915 Female, age 42, unknown 44.2
1942 Male, age 51, unknown 38.8
2223 Female, age 72, unknown 36.7
2021 Male, age 53, unknown 34.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 51.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 51.9
Samples: 139

Max nTPM: 115.4
Min nTPM: 29.2
Std nTPM: 14.6
Median nTPM: 48.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 115.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 109.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 104.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 95.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 84.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 79.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 78.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 72.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 72.6
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 70.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.6
FF:10158-103A5 76 years, female 84.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 98.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 98.3
Samples: 4

Max nTPM: 105.1
Min nTPM: 90.8
Sample A Male 90.8
Sample B Male 101.7
Sample C Female 105.1
Sample D Female 95.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.7
71280982 Antisense, RP_050818_02_A02, Mouse strain C57BL/6J (56 days, male) 3.7

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The Human Protein Atlas

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