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SAMD4B
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:34.2 nTPM
HPA:34.2 nTPM
GTEx:43.9 nTPM
FANTOM5:30.1 Scaled Tags Per Million
Pig:27.1 nTPM
Mouse:25.5 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016800
Glial cells High
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 34.2
Sample id Sample description nTPM
Hippocampus
nTPM: 31.4
2529 Female, age 94, left hemisphere 41.9
2621 Female, age 67, right hemisphere 40.6
2148 Female, age 91, left hemisphere 27.2
1855 Male, age 76, left hemisphere 26.9
1898 Male, age 80, left hemisphere 26.0
1911 Female, age 85, right hemisphere 25.8
Dentate gyrus
nTPM: 27.9
2530 Female, age 94, left hemisphere 39.0
2531 Female, age 67, both hemispheres 36.3
2010 Male, age 76, both hemispheres 25.4
2528 Male, age 74, both hemispheres 25.0
2246 Female, age 85, both hemispheres 24.3
1927 Female, age 91, both hemispheres 17.6
Entorhinal gyrus
nTPM: 34.2
2613 Female, age 94, left hemisphere 43.5
2686 Male, age 75, right hemisphere 38.2
2117 Female, age 91, right hemisphere 37.4
2764 Male, age 80, right hemisphere 34.1
1938 Female, age 85, left hemisphere 28.2
1787 Male, age 76, left hemisphere 23.6
Hippocampus, CA1
nTPM: 23.9
2527 Male, age 74, both hemispheres 27.6
2082 Female, age 91, right hemisphere 26.7
2749 Male, age 80, left hemisphere 26.1
1873 Female, age 85, both hemispheres 22.6
2045 Male, age 76, both hemispheres 16.3
Hippocampus, CA2
nTPM: 26.9
2437 Female, age 94, left hemisphere 31.9
1963 Male, age 80, left hemisphere 30.9
1940 Female, age 85, left hemisphere 30.3
2113 Female, age 91, right hemisphere 27.0
2249 Male, age 74, both hemispheres 22.5
1892 Male, age 76, both hemispheres 18.9
Hippocampus, CA3
nTPM: 30.2
2861 Female, age 67, both hemispheres 43.7
2620 Female, age 94, left hemisphere 39.5
1891 Female, age 85, both hemispheres 29.5
2137 Male, age 80, left hemisphere 25.0
2436 Male, age 74, both hemispheres 22.9
1867 Male, age 76, both hemispheres 20.6
Parahippocampal cortex
nTPM: 29.0
2692 Male, age 74, both hemispheres 39.2
2622 Female, age 67, right hemisphere 36.9
2532 Female, age 72, left hemisphere 32.6
2245 Female, age 91, both hemispheres 30.0
1933 Female, age 85, both hemispheres 27.7
2693 Female, age 94, both hemispheres 27.1
1850 Male, age 80, both hemispheres 25.7
1990 Female, age 91, right hemisphere 24.3
2018 Male, age 76, both hemispheres 23.6
2250 Female, age 67, right hemisphere 22.7
Perirhinal gyrus
nTPM: 24.7
2521 Female, age 94, right hemisphere 28.4
1794 Male, age 80, right hemisphere 27.9
1841 Female, age 85, right hemisphere 25.0
1847 Female, age 91, left hemisphere 23.5
2848 Male, age 76, right hemisphere 18.9
Subiculum
nTPM: 30.4
2042 Male, age 76, both hemispheres 38.9
1901 Male, age 80, both hemispheres 32.8
2619 Male, age 74, both hemispheres 31.1
2438 Female, age 94, left hemisphere 29.8
1977 Female, age 85, both hemispheres 25.6
2729 Female, age 91, right hemisphere 24.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.9
Samples: 197

Max nTPM: 107.0
Min nTPM: 18.3
Std nTPM: 13.7
Median nTPM: 41.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 107.0
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 104.0
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 78.4
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 75.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 74.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 72.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 71.8
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 71.6
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 71.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 67.4
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 66.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 30.1
FF:10153-102I9 76 years, female 44.6
FF:10169-103B7 60 years, female 15.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 23.6
Samples: 4

Max nTPM: 27.6
Min nTPM: 17.9
Sample A Female 27.6
Sample B Female 23.6
Sample C Male 25.2
Sample D Male 17.9
Entorhinal cortex
nTPM: 27.1
Samples: 4

Max nTPM: 29.3
Min nTPM: 23.3
Sample A Female 29.3
Sample B Female 23.3
Sample C Male 29.1
Sample D Male 26.7
Subiculum
nTPM: 27.0
Samples: 4

Max nTPM: 34.3
Min nTPM: 22.3
Sample A Female 34.3
Sample B Female 23.7
Sample C Male 27.6
Sample D Male 22.3
Ventral hippocampus
nTPM: 25.4
Samples: 4

Max nTPM: 33.8
Min nTPM: 18.8
Sample A Female 21.0
Sample B Female 18.8
Sample C Male 33.8
Sample D Male 28.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 25.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 25.2
Samples: 4

Max nTPM: 28.2
Min nTPM: 23.6
Sample A Male 25.5
Sample B Male 23.6
Sample C Female 23.6
Sample D Female 28.2
Hippocampal formation
nTPM: 25.5
Samples: 4

Max nTPM: 26.9
Min nTPM: 22.3
Sample A Male 22.3
Sample B Male 25.9
Sample C Female 26.8
Sample D Female 26.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
70528348 Antisense, RP_050623_02_D05, Mouse strain C57BL/6J (56 days, male) 1.1

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