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SAMD4B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:45.9 nTPM
HPA:45.9 nTPM
GTEx:43.5 nTPM
FANTOM5:53.5 Scaled Tags Per Million
Pig:26.2 nTPM
Mouse:20.7 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 45.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.8
2586 Male, age 75, left hemisphere 70.1
2666 Male, age 74, left hemisphere 53.8
1833 Male, age 53, unknown 46.2
2828 Female, age 72, unknown 44.3
1830 Male, age 51, unknown 43.0
1870 Female, age 42, unknown 41.7
1827 Male, age 72, unknown 36.6
2411 Female, age 72, unknown 35.6
2019 Male, age 18, unknown 31.4
2219 Male, age 76, both hemispheres 24.8
Dorsal raphe nucleus
nTPM: 34.8
1828 Male, age 53, unknown 39.2
2016 Female, age 72, unknown 38.6
2750 Male, age 76, both hemispheres 38.5
2047 Male, age 72, unknown 33.6
2298 Female, age 72, unknown 24.4
Inferior colliculus
nTPM: 30.1
2849 Male, age 72, unknown 38.7
1848 Female, age 42, unknown 32.5
1890 Male, age 53, unknown 29.3
2097 Female, age 72, unknown 19.7
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Pedunculopontine tegmental nucleus
nTPM: 31.8
2334 Male, age 80, both hemispheres 37.3
2338 Male, age 61, both hemispheres 30.4
1921 Female, age 85, both hemispheres 27.6
Periaquaductal grey, anterior
nTPM: 38.0
1947 Male, age 18, unknown 40.6
2502 Female, age 75, unknown 37.2
1795 Male, age 51, unknown 36.1
Periaquaductal grey, dorsal
nTPM: 29.1
2850 Male, age 76, both hemispheres 33.7
2464 Female, age 72, unknown 30.9
1840 Male, age 53, unknown 27.9
1831 Male, age 72, unknown 24.0
Periaquaductal grey, lateral
nTPM: 28.5
2053 Male, age 18, unknown 32.8
2140 Male, age 76, both hemispheres 30.6
2272 Male, age 74, both hemispheres 22.1
Pretectal area
nTPM: 30.9
2407 Male, age 75, both hemispheres 40.8
2825 Male, age 18, unknown 38.6
2316 Male, age 76, right hemisphere 35.6
1815 Male, age 53, unknown 32.4
1817 Female, age 42, unknown 32.4
2667 Female, age 75, unknown 31.5
2007 Male, age 72, unknown 29.2
1944 Female, age 72, unknown 27.5
1816 Male, age 51, unknown 27.2
2224 Female, age 72, unknown 25.0
2273 Male, age 74, both hemispheres 19.6
Red nucleus
nTPM: 45.9
2584 Male, age 75, left hemisphere 57.2
2823 Male, age 76, right hemisphere 56.8
2769 Male, age 72, unknown 51.4
2588 Male, age 74, left hemisphere 48.6
2227 Male, age 72, unknown 48.3
1904 Male, age 53, unknown 46.6
1865 Male, age 51, unknown 45.0
1954 Female, age 42, unknown 43.6
2785 Male, age 18, unknown 40.7
2503 Female, age 72, unknown 40.3
1821 Female, age 72, unknown 39.3
2725 Female, age 75, unknown 33.3
Substantia nigra
nTPM: 36.6
2583 Male, age 75, right hemisphere 50.8
2699 Male, age 18, unknown 44.8
1851 Male, age 51, unknown 40.7
2665 Male, age 74, both hemispheres 40.4
1916 Female, age 42, unknown 36.7
2590 Female, age 75, unknown 34.3
1889 Female, age 72, unknown 31.2
2241 Male, age 72, unknown 31.2
2409 Female, age 72, unknown 28.9
1941 Male, age 53, unknown 27.4
Superior colliculus
nTPM: 36.4
2664 Male, age 75, both hemispheres 51.0
2668 Female, age 75, unknown 50.5
1995 Male, age 72, unknown 37.6
1913 Female, age 42, unknown 37.0
1839 Male, age 51, unknown 36.6
1796 Male, age 53, unknown 36.2
1895 Male, age 76, right hemisphere 33.0
2587 Male, age 74, left hemisphere 29.8
2261 Male, age 18, unknown 27.1
2087 Female, age 72, unknown 24.9
Ventral tegmental area
nTPM: 35.9
2223 Female, age 72, unknown 39.8
2410 Female, age 72, unknown 38.0
1942 Male, age 51, unknown 35.6
2021 Male, age 53, unknown 34.9
1915 Female, age 42, unknown 34.1
2218 Male, age 76, both hemispheres 33.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.5
Samples: 139

Max nTPM: 89.5
Min nTPM: 16.5
Std nTPM: 12.5
Median nTPM: 42.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 89.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 76.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 72.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 70.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 69.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 69.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 67.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 64.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 63.2
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 63.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.5
FF:10158-103A5 76 years, female 53.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.2
Pig sample Sample description nTPM
Midbrain
nTPM: 24.9
Samples: 4

Max nTPM: 28.2
Min nTPM: 22.4
Sample A Female 28.2
Sample B Female 26.2
Sample C Male 22.4
Sample D Male 22.6
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 26.8
Min nTPM: 23.4
Sample B Female 26.8
Sample C Male 26.8
Sample D Male 23.4
Substantia nigra
nTPM: 26.2
Samples: 4

Max nTPM: 29.7
Min nTPM: 22.7
Sample A Female 25.4
Sample B Female 22.7
Sample C Male 29.7
Sample D Male 26.8
Superior colliculi
nTPM: 23.8
Samples: 4

Max nTPM: 28.0
Min nTPM: 20.0
Sample A Female 26.9
Sample B Female 20.0
Sample C Male 20.4
Sample D Male 28.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 21.8
Min nTPM: 19.7
Sample A Male 21.8
Sample B Male 20.6
Sample C Female 19.7
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70528348 Antisense, RP_050623_02_D05, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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