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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:73.1 nTPM
HPA:73.1 nTPM
GTEx:93.9 nTPM
FANTOM5:505.2 Scaled Tags Per Million
Pig:131.9 nTPM
Mouse:562.4 nTPM
Allen mouse:21.4 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 73.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 39.5
1857 Female, age 85, left hemisphere 50.2
2288 Male, age 75, left hemisphere 44.0
1781 Male, age 74, unknown 43.0
2290 Female, age 72, unknown 40.3
2846 Female, age 79, unknown 40.2
1854 Male, age 80, left hemisphere 37.1
2481 Female, age 94, left hemisphere 32.9
2289 Male, age 61, right hemisphere 28.1
Claustrum
nTPM: 47.4
2198 Male, age 80, both hemispheres 66.2
2284 Female, age 91, both hemispheres 52.7
2568 Male, age 61, both hemispheres 52.5
2196 Female, age 79, unknown 47.6
2491 Male, age 75, both hemispheres 47.3
1956 Male, age 74, unknown 43.0
2645 Female, age 72, unknown 39.6
2392 Female, age 94, both hemispheres 39.5
2292 Female, age 85, both hemispheres 38.5
Globus pallidus, externus
nTPM: 30.6
2772 Female, age 79, unknown 39.8
2646 Male, age 61, right hemisphere 37.0
2395 Male, age 75, both hemispheres 34.6
1996 Male, age 80, right hemisphere 30.2
2567 Female, age 72, unknown 11.4
Globus pallidus, internus
nTPM: 30.5
2287 Male, age 75, right hemisphere 45.9
2483 Female, age 94, right hemisphere 44.0
2778 Female, age 91, both hemispheres 30.2
1818 Male, age 74, unknown 30.1
2037 Male, age 80, right hemisphere 26.5
2566 Female, age 72, unknown 19.9
2111 Female, age 85, right hemisphere 16.6
Nucleus accumbens
nTPM: 47.6
1856 Female, age 91, right hemisphere 75.3
1806 Female, age 85, left hemisphere 54.5
2698 Female, age 72, unknown 53.1
1783 Male, age 74, unknown 46.5
2286 Male, age 75, left hemisphere 45.0
2732 Male, age 80, right hemisphere 40.8
2824 Male, age 61, right hemisphere 40.3
2391 Female, age 94, left hemisphere 25.5
Nucleus basalis of Meynert
nTPM: 34.4
2821 Male, age 75, both hemispheres 36.6
2569 Male, age 61, both hemispheres 36.3
2484 Female, age 94, left hemisphere 32.3
2393 Male, age 80, right hemisphere 32.2
Nucleus of the diagonal band
nTPM: 73.1
2775 Male, age 80, right hemisphere 82.0
2195 Female, age 85, both hemispheres 79.2
1812 Female, age 91, both hemispheres 78.6
1979 Male, age 74, unknown 64.0
2029 Male, age 61, right hemisphere 61.5
Olfactory tubercle
nTPM: 67.3
2487 Female, age 94, left hemisphere 73.4
1998 Female, age 91, both hemispheres 71.0
1846 Male, age 80, right hemisphere 67.5
2856 Male, age 75, right hemisphere 57.0
Putamen
nTPM: 35.6
1937 Female, age 91, right hemisphere 48.1
1838 Male, age 80, right hemisphere 45.9
2466 Female, age 79, unknown 37.7
1829 Male, age 74, unknown 33.6
2647 Male, age 75, left hemisphere 32.8
2482 Female, age 94, left hemisphere 31.0
2489 Female, age 72, unknown 20.2
Septal nuclei
nTPM: 63.5
1960 Male, age 74, unknown 82.5
2031 Female, age 72, unknown 72.4
2629 Female, age 94, right hemisphere 69.7
2009 Female, age 91, both hemispheres 66.3
2059 Female, age 85, both hemispheres 60.7
2394 Male, age 61, left hemisphere 47.0
2199 Male, age 80, right hemisphere 46.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 93.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 64.1
Samples: 246

Max nTPM: 130.1
Min nTPM: 27.2
Std nTPM: 18.5
Median nTPM: 61.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 130.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 115.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 112.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 111.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 110.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 105.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 104.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 102.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 101.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 99.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 99.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 93.9
Samples: 246

Max nTPM: 180.1
Min nTPM: 18.9
Std nTPM: 30.4
Median nTPM: 94.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 180.1
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 176.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 170.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 160.1
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 158.7
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 158.2
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 157.6
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 150.9
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 150.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 149.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 143.7
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Brain - Putamen (basal ganglia)
Average nTPM: 63.2
Samples: 205

Max nTPM: 117.5
Min nTPM: 26.5
Std nTPM: 18.0
Median nTPM: 60.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 117.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 108.8
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 105.7
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 104.8
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 103.6
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 103.6
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 102.5
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 100.7
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 100.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 98.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 96.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 505.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 310.5
FF:10164-103B2 76 years, female 310.5
Globus pallidus
Scaled Tags Per Million: 215.6
FF:10175-103C4 60 years, female 297.5
FF:10161-103A8 76 years, female 133.7
Nucleus accumbens
Scaled Tags Per Million: 416.7
FF:10037-101F1 23-56 years, mixed 416.7
Putamen
Scaled Tags Per Million: 505.2
FF:10176-103C5 60 years, female 505.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 131.9
Pig sample Sample description nTPM
Caudate
nTPM: 131.9
Samples: 4

Max nTPM: 159.9
Min nTPM: 113.2
Sample A Female 113.2
Sample B Female 139.2
Sample C Male 159.9
Sample D Male 115.1
Putamen
nTPM: 103.5
Samples: 4

Max nTPM: 133.7
Min nTPM: 66.2
Sample A Female 66.2
Sample B Female 97.6
Sample C Male 133.7
Sample D Male 116.5
Septum
nTPM: 116.3
Samples: 4

Max nTPM: 130.0
Min nTPM: 103.0
Sample A Female 123.7
Sample B Female 103.0
Sample C Male 130.0
Sample D Male 108.5
Ventral pallidum
nTPM: 104.0
Samples: 4

Max nTPM: 128.2
Min nTPM: 87.1
Sample A Female 128.2
Sample B Female 87.1
Sample C Male 101.5
Sample D Male 99.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 562.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 324.0
Samples: 4

Max nTPM: 349.8
Min nTPM: 295.4
Sample A Male 338.2
Sample B Male 349.8
Sample C Female 295.4
Sample D Female 312.6
Septum
nTPM: 562.4
Samples: 4

Max nTPM: 602.4
Min nTPM: 545.7
Sample A Male 553.7
Sample B Male 602.4
Sample C Female 547.6
Sample D Female 545.7
Ventral forebrain
nTPM: 393.9
Samples: 4

Max nTPM: 430.2
Min nTPM: 368.3
Sample A Male 368.3
Sample B Male 430.2
Sample C Female 396.5
Sample D Female 380.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 21.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 21.4
69015619 Antisense, RP_050315_01_D02, Mouse strain C57BL/6J (56 days, male) 21.4
Pallidum
Expression energy: 21.0
69015619 Antisense, RP_050315_01_D02, Mouse strain C57BL/6J (56 days, male) 21.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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