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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.6 nTPM
HPA:23.6 nTPM
GTEx:17.1 nTPM
FANTOM5:8.6 Scaled Tags Per Million
Pig:5.6 nTPM
Mouse:12.7 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 23.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 22.1
2290 Female, age 72, unknown 24.4
2846 Female, age 79, unknown 24.2
1781 Male, age 74, unknown 22.9
2289 Male, age 61, right hemisphere 22.6
2288 Male, age 75, left hemisphere 21.1
1854 Male, age 80, left hemisphere 20.9
1857 Female, age 85, left hemisphere 20.7
2481 Female, age 94, left hemisphere 20.1
Claustrum
nTPM: 21.3
2645 Female, age 72, unknown 22.6
2568 Male, age 61, both hemispheres 22.5
2198 Male, age 80, both hemispheres 22.0
2284 Female, age 91, both hemispheres 21.7
2491 Male, age 75, both hemispheres 21.3
1956 Male, age 74, unknown 20.8
2196 Female, age 79, unknown 20.7
2292 Female, age 85, both hemispheres 20.6
2392 Female, age 94, both hemispheres 19.1
Globus pallidus, externus
nTPM: 22.4
2646 Male, age 61, right hemisphere 24.9
2567 Female, age 72, unknown 23.4
1996 Male, age 80, right hemisphere 21.7
2772 Female, age 79, unknown 21.1
2395 Male, age 75, both hemispheres 20.8
Globus pallidus, internus
nTPM: 21.7
2483 Female, age 94, right hemisphere 25.3
2566 Female, age 72, unknown 23.0
2287 Male, age 75, right hemisphere 22.2
2778 Female, age 91, both hemispheres 20.5
2111 Female, age 85, right hemisphere 20.3
1818 Male, age 74, unknown 20.1
2037 Male, age 80, right hemisphere 20.1
Nucleus accumbens
nTPM: 20.7
1783 Male, age 74, unknown 23.3
2698 Female, age 72, unknown 21.2
1806 Female, age 85, left hemisphere 20.9
1856 Female, age 91, right hemisphere 20.5
2824 Male, age 61, right hemisphere 20.2
2286 Male, age 75, left hemisphere 20.0
2391 Female, age 94, left hemisphere 19.9
2732 Male, age 80, right hemisphere 19.6
Nucleus basalis of Meynert
nTPM: 22.5
2569 Male, age 61, both hemispheres 25.7
2484 Female, age 94, left hemisphere 22.6
2821 Male, age 75, both hemispheres 21.2
2393 Male, age 80, right hemisphere 20.5
Nucleus of the diagonal band
nTPM: 19.5
1979 Male, age 74, unknown 20.6
2029 Male, age 61, right hemisphere 19.6
2775 Male, age 80, right hemisphere 19.3
1812 Female, age 91, both hemispheres 19.1
2195 Female, age 85, both hemispheres 18.8
Olfactory tubercle
nTPM: 19.6
2856 Male, age 75, right hemisphere 21.3
1998 Female, age 91, both hemispheres 20.3
2487 Female, age 94, left hemisphere 18.6
1846 Male, age 80, right hemisphere 18.4
Putamen
nTPM: 23.6
2489 Female, age 72, unknown 26.2
1829 Male, age 74, unknown 26.1
2647 Male, age 75, left hemisphere 25.0
2466 Female, age 79, unknown 23.8
1838 Male, age 80, right hemisphere 22.6
1937 Female, age 91, right hemisphere 21.4
2482 Female, age 94, left hemisphere 19.9
Septal nuclei
nTPM: 19.5
2394 Male, age 61, left hemisphere 20.8
2199 Male, age 80, right hemisphere 20.4
2629 Female, age 94, right hemisphere 19.8
2059 Female, age 85, both hemispheres 19.6
2031 Female, age 72, unknown 19.0
1960 Male, age 74, unknown 18.7
2009 Female, age 91, both hemispheres 17.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 17.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 15.1
Samples: 246

Max nTPM: 26.2
Min nTPM: 6.2
Std nTPM: 2.9
Median nTPM: 15.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 26.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 23.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 22.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 22.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 21.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 21.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 21.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 21.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 21.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 21.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 20.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 13.6
Samples: 246

Max nTPM: 24.4
Min nTPM: 5.8
Std nTPM: 3.1
Median nTPM: 13.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 24.4
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 24.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 23.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 22.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 22.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 21.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 21.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 20.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 20.0
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 19.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 19.5
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Brain - Putamen (basal ganglia)
Average nTPM: 17.1
Samples: 205

Max nTPM: 32.0
Min nTPM: 8.8
Std nTPM: 3.3
Median nTPM: 16.9
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 32.0
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 26.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 26.1
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 25.5
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 25.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 24.5
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 24.5
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 24.0
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 23.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 23.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 23.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 5.4
FF:10164-103B2 76 years, female 5.4
Globus pallidus
Scaled Tags Per Million: 8.0
FF:10161-103A8 76 years, female 9.7
FF:10175-103C4 60 years, female 6.3
Nucleus accumbens
Scaled Tags Per Million: 8.6
FF:10037-101F1 23-56 years, mixed 8.6
Putamen
Scaled Tags Per Million: 5.4
FF:10176-103C5 60 years, female 5.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.6
Pig sample Sample description nTPM
Caudate
nTPM: 4.9
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 5.2
Sample C Male 5.2
Sample D Male 4.8
Putamen
nTPM: 5.6
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.3
Sample A Female 5.6
Sample B Female 5.3
Sample C Male 5.4
Sample D Male 6.2
Septum
nTPM: 4.8
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.5
Sample A Female 4.6
Sample B Female 5.2
Sample C Male 4.5
Sample D Male 4.7
Ventral pallidum
nTPM: 5.2
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 4.8
Sample C Male 6.8
Sample D Male 5.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.5
Samples: 4

Max nTPM: 15.0
Min nTPM: 11.0
Sample A Male 12.5
Sample B Male 15.0
Sample C Female 11.0
Sample D Female 11.5
Septum
nTPM: 12.7
Samples: 4

Max nTPM: 14.4
Min nTPM: 10.9
Sample A Male 10.9
Sample B Male 14.2
Sample C Female 14.4
Sample D Female 11.4
Ventral forebrain
nTPM: 11.4
Samples: 4

Max nTPM: 12.4
Min nTPM: 10.1
Sample A Male 10.8
Sample B Male 10.1
Sample C Female 12.3
Sample D Female 12.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
70787654 Antisense, RP_050706_04_F10, Mouse strain C57BL/6J (56 days, male) 0.1
69288974 Antisense, RP_050407_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
70787654 Antisense, RP_050706_04_F10, Mouse strain C57BL/6J (56 days, male) 0.0
69288974 Antisense, RP_050407_02_B02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.