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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.1 nTPM
HPA:8.1 nTPM
GTEx:7.7 nTPM
FANTOM5:7.3 Scaled Tags Per Million
Pig:1.0 nTPM
Mouse:6.5 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 8.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.3
1857 Female, age 85, left hemisphere 7.9
1781 Male, age 74, unknown 6.1
1854 Male, age 80, left hemisphere 5.8
2846 Female, age 79, unknown 4.2
2290 Female, age 72, unknown 3.6
2481 Female, age 94, left hemisphere 3.0
2289 Male, age 61, right hemisphere 2.7
2288 Male, age 75, left hemisphere 1.0
Claustrum
nTPM: 2.3
2196 Female, age 79, unknown 3.5
2645 Female, age 72, unknown 3.0
2568 Male, age 61, both hemispheres 2.8
2284 Female, age 91, both hemispheres 2.5
2198 Male, age 80, both hemispheres 2.2
1956 Male, age 74, unknown 2.0
2392 Female, age 94, both hemispheres 1.7
2292 Female, age 85, both hemispheres 1.6
2491 Male, age 75, both hemispheres 1.1
Globus pallidus, externus
nTPM: 4.5
1996 Male, age 80, right hemisphere 9.2
2567 Female, age 72, unknown 5.0
2646 Male, age 61, right hemisphere 3.8
2772 Female, age 79, unknown 2.6
2395 Male, age 75, both hemispheres 2.1
Globus pallidus, internus
nTPM: 8.1
2483 Female, age 94, right hemisphere 16.2
2037 Male, age 80, right hemisphere 10.6
2778 Female, age 91, both hemispheres 7.8
2566 Female, age 72, unknown 7.0
1818 Male, age 74, unknown 5.3
2287 Male, age 75, right hemisphere 5.1
2111 Female, age 85, right hemisphere 4.5
Nucleus accumbens
nTPM: 4.4
1806 Female, age 85, left hemisphere 7.2
1856 Female, age 91, right hemisphere 6.1
2824 Male, age 61, right hemisphere 4.9
2698 Female, age 72, unknown 4.7
1783 Male, age 74, unknown 4.1
2732 Male, age 80, right hemisphere 4.0
2391 Female, age 94, left hemisphere 2.0
2286 Male, age 75, left hemisphere 1.8
Nucleus basalis of Meynert
nTPM: 3.8
2569 Male, age 61, both hemispheres 5.4
2393 Male, age 80, right hemisphere 4.9
2484 Female, age 94, left hemisphere 3.3
2821 Male, age 75, both hemispheres 1.7
Nucleus of the diagonal band
nTPM: 3.5
1979 Male, age 74, unknown 4.3
2775 Male, age 80, right hemisphere 4.2
2195 Female, age 85, both hemispheres 3.4
2029 Male, age 61, right hemisphere 2.9
1812 Female, age 91, both hemispheres 2.7
Olfactory tubercle
nTPM: 3.0
2856 Male, age 75, right hemisphere 4.8
1998 Female, age 91, both hemispheres 2.9
1846 Male, age 80, right hemisphere 2.4
2487 Female, age 94, left hemisphere 1.8
Putamen
nTPM: 4.2
2482 Female, age 94, left hemisphere 7.6
1838 Male, age 80, right hemisphere 5.7
1937 Female, age 91, right hemisphere 4.9
2466 Female, age 79, unknown 3.9
2489 Female, age 72, unknown 3.4
1829 Male, age 74, unknown 2.9
2647 Male, age 75, left hemisphere 1.0
Septal nuclei
nTPM: 3.0
2394 Male, age 61, left hemisphere 4.6
1960 Male, age 74, unknown 3.3
2031 Female, age 72, unknown 3.3
2059 Female, age 85, both hemispheres 3.2
2009 Female, age 91, both hemispheres 2.7
2199 Male, age 80, right hemisphere 2.5
2629 Female, age 94, right hemisphere 1.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.0
Samples: 246

Max nTPM: 38.5
Min nTPM: 0.2
Std nTPM: 6.5
Median nTPM: 2.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 38.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 36.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 34.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 29.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 28.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 27.8
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 27.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 26.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 25.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 23.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 22.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.7
Samples: 246

Max nTPM: 37.1
Min nTPM: 0.4
Std nTPM: 6.5
Median nTPM: 5.7
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 37.1
GTEX-1445S-0011-R6b-SM-5PNUF 60-69 years, male 36.4
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 34.6
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 34.2
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 33.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 31.1
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 25.9
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 24.1
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 24.0
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 23.1
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 22.3
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Brain - Putamen (basal ganglia)
Average nTPM: 4.7
Samples: 205

Max nTPM: 33.1
Min nTPM: 0.5
Std nTPM: 5.4
Median nTPM: 2.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 33.1
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 31.3
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 30.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 26.5
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 24.1
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 21.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 20.7
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 18.1
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 17.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 17.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 14.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2.9
FF:10164-103B2 76 years, female 2.9
Globus pallidus
Scaled Tags Per Million: 2.3
FF:10175-103C4 60 years, female 3.1
FF:10161-103A8 76 years, female 1.4
Nucleus accumbens
Scaled Tags Per Million: 0.9
FF:10037-101F1 23-56 years, mixed 0.9
Putamen
Scaled Tags Per Million: 7.3
FF:10176-103C5 60 years, female 7.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.0
Pig sample Sample description nTPM
Caudate
nTPM: 1.0
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.8
Sample A Female 0.9
Sample B Female 1.1
Sample C Male 0.8
Sample D Male 1.1
Putamen
nTPM: 1.0
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.8
Sample A Female 0.9
Sample B Female 1.2
Sample C Male 0.9
Sample D Male 0.8
Septum
nTPM: 0.9
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.9
Sample A Female 0.9
Sample B Female 0.9
Sample C Male 1.0
Sample D Male 0.9
Ventral pallidum
nTPM: 0.9
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.6
Sample A Female 1.2
Sample B Female 0.8
Sample C Male 0.6
Sample D Male 1.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 6.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.0
Samples: 4

Max nTPM: 4.2
Min nTPM: 1.6
Sample A Male 1.6
Sample B Male 2.2
Sample C Female 4.0
Sample D Female 4.2
Septum
nTPM: 6.5
Samples: 4

Max nTPM: 6.6
Min nTPM: 6.2
Sample A Male 6.2
Sample B Male 6.6
Sample C Female 6.6
Sample D Female 6.5
Ventral forebrain
nTPM: 6.1
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.3
Sample A Male 7.1
Sample B Male 4.3
Sample C Female 4.9
Sample D Female 8.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
78153167 Antisense, RP_070129_04_C02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 0.5
78153167 Antisense, RP_070129_04_C02, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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