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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:86.7 nTPM
HPA:86.7 nTPM
GTEx:45.6 nTPM
FANTOM5:31.9 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:8.2 nTPM
Allen mouse:10.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007308Antibody CAB012421
Glial cells LowNot detected
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 86.7
Sample id Sample description nTPM
Hippocampus
nTPM: 86.7
1855 Male, age 76, left hemisphere 97.3
2529 Female, age 94, left hemisphere 91.8
2621 Female, age 67, right hemisphere 84.1
1898 Male, age 80, left hemisphere 83.2
2148 Female, age 91, left hemisphere 82.6
1911 Female, age 85, right hemisphere 80.9
Dentate gyrus
nTPM: 81.6
2010 Male, age 76, both hemispheres 92.3
2528 Male, age 74, both hemispheres 83.0
1927 Female, age 91, both hemispheres 80.3
2246 Female, age 85, both hemispheres 80.0
2530 Female, age 94, left hemisphere 77.1
2531 Female, age 67, both hemispheres 76.6
Entorhinal gyrus
nTPM: 80.8
1938 Female, age 85, left hemisphere 83.2
2117 Female, age 91, right hemisphere 83.1
1787 Male, age 76, left hemisphere 82.4
2686 Male, age 75, right hemisphere 81.2
2764 Male, age 80, right hemisphere 78.9
2613 Female, age 94, left hemisphere 76.1
Hippocampus, CA1
nTPM: 84.2
2527 Male, age 74, both hemispheres 90.0
2045 Male, age 76, both hemispheres 85.0
2082 Female, age 91, right hemisphere 84.8
2749 Male, age 80, left hemisphere 81.5
1873 Female, age 85, both hemispheres 79.6
Hippocampus, CA2
nTPM: 85.3
2249 Male, age 74, both hemispheres 99.9
2113 Female, age 91, right hemisphere 87.2
1892 Male, age 76, both hemispheres 83.5
1940 Female, age 85, left hemisphere 81.7
2437 Female, age 94, left hemisphere 79.9
1963 Male, age 80, left hemisphere 79.4
Hippocampus, CA3
nTPM: 86.1
2436 Male, age 74, both hemispheres 106.6
1867 Male, age 76, both hemispheres 91.1
2137 Male, age 80, left hemisphere 83.3
1891 Female, age 85, both hemispheres 79.2
2861 Female, age 67, both hemispheres 78.9
2620 Female, age 94, left hemisphere 77.4
Parahippocampal cortex
nTPM: 83.0
2018 Male, age 76, both hemispheres 88.8
2622 Female, age 67, right hemisphere 84.4
2250 Female, age 67, right hemisphere 84.2
2245 Female, age 91, both hemispheres 84.0
1933 Female, age 85, both hemispheres 83.1
1850 Male, age 80, both hemispheres 82.3
2693 Female, age 94, both hemispheres 82.2
1990 Female, age 91, right hemisphere 81.3
2692 Male, age 74, both hemispheres 81.0
2532 Female, age 72, left hemisphere 78.9
Perirhinal gyrus
nTPM: 82.2
1847 Female, age 91, left hemisphere 82.9
2521 Female, age 94, right hemisphere 82.9
1841 Female, age 85, right hemisphere 82.1
2848 Male, age 76, right hemisphere 82.0
1794 Male, age 80, right hemisphere 80.9
Subiculum
nTPM: 83.7
2042 Male, age 76, both hemispheres 90.1
2729 Female, age 91, right hemisphere 84.0
2438 Female, age 94, left hemisphere 83.8
2619 Male, age 74, both hemispheres 82.2
1901 Male, age 80, both hemispheres 82.0
1977 Female, age 85, both hemispheres 79.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 45.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 45.6
Samples: 197

Max nTPM: 290.6
Min nTPM: 12.2
Std nTPM: 34.1
Median nTPM: 35.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 290.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 197.3
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 165.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 161.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 146.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 146.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 140.8
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 136.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 120.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 116.1
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 104.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 31.9
FF:10153-102I9 76 years, female 35.5
FF:10169-103B7 60 years, female 28.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.8
Samples: 4

Max nTPM: 20.2
Min nTPM: 11.6
Sample A Female 20.2
Sample B Female 16.1
Sample C Male 15.2
Sample D Male 11.6
Entorhinal cortex
nTPM: 15.8
Samples: 4

Max nTPM: 23.7
Min nTPM: 12.5
Sample A Female 13.7
Sample B Female 23.7
Sample C Male 13.4
Sample D Male 12.5
Subiculum
nTPM: 13.5
Samples: 4

Max nTPM: 17.6
Min nTPM: 10.5
Sample A Female 17.6
Sample B Female 14.6
Sample C Male 11.3
Sample D Male 10.5
Ventral hippocampus
nTPM: 13.5
Samples: 4

Max nTPM: 16.3
Min nTPM: 11.8
Sample A Female 12.4
Sample B Female 13.6
Sample C Male 16.3
Sample D Male 11.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 8.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 9.5
Min nTPM: 6.3
Sample A Male 9.5
Sample B Male 7.4
Sample C Female 9.5
Sample D Female 6.3
Hippocampal formation
nTPM: 7.7
Samples: 4

Max nTPM: 8.6
Min nTPM: 6.7
Sample A Male 7.9
Sample B Male 6.7
Sample C Female 7.4
Sample D Female 8.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.8
413770 Antisense, RP_040809_01_C01, Mouse strain C57BL/6J (56 days, male) 14.6
74800915 Antisense, RP_060315_02_A08, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.