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HIGD1A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:148.8 nTPM
HPA:148.8 nTPM
GTEx:266.5 nTPM
FANTOM5:88.9 Scaled Tags Per Million
Pig:113.3 nTPM
Mouse:99.6 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 148.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.1
2411 Female, age 72, unknown 150.0
1870 Female, age 42, unknown 143.8
2019 Male, age 18, unknown 140.4
1830 Male, age 51, unknown 136.0
2219 Male, age 76, both hemispheres 135.4
2586 Male, age 75, left hemisphere 134.9
1833 Male, age 53, unknown 134.0
1827 Male, age 72, unknown 131.3
2828 Female, age 72, unknown 122.9
2666 Male, age 74, left hemisphere 122.5
Dorsal raphe nucleus
nTPM: 143.4
2750 Male, age 76, both hemispheres 148.8
2298 Female, age 72, unknown 145.8
2047 Male, age 72, unknown 142.8
1828 Male, age 53, unknown 142.3
2016 Female, age 72, unknown 137.3
Inferior colliculus
nTPM: 141.6
2097 Female, age 72, unknown 150.6
1890 Male, age 53, unknown 143.4
1848 Female, age 42, unknown 141.0
2849 Male, age 72, unknown 131.3
Median raphe nucleus
nTPM: 145.8
2220 Male, age 76, midline 145.8
Pedunculopontine tegmental nucleus
nTPM: 143.0
2334 Male, age 80, both hemispheres 147.1
1921 Female, age 85, both hemispheres 145.4
2338 Male, age 61, both hemispheres 136.5
Periaquaductal grey, anterior
nTPM: 134.5
2502 Female, age 75, unknown 137.5
1947 Male, age 18, unknown 137.3
1795 Male, age 51, unknown 128.8
Periaquaductal grey, dorsal
nTPM: 133.4
1840 Male, age 53, unknown 136.9
2464 Female, age 72, unknown 134.5
2850 Male, age 76, both hemispheres 133.0
1831 Male, age 72, unknown 129.2
Periaquaductal grey, lateral
nTPM: 128.7
2053 Male, age 18, unknown 132.3
2272 Male, age 74, both hemispheres 129.2
2140 Male, age 76, both hemispheres 124.8
Pretectal area
nTPM: 138.3
2667 Female, age 75, unknown 149.4
1944 Female, age 72, unknown 146.8
1816 Male, age 51, unknown 144.5
1817 Female, age 42, unknown 144.0
2224 Female, age 72, unknown 142.3
2007 Male, age 72, unknown 142.2
1815 Male, age 53, unknown 140.5
2273 Male, age 74, both hemispheres 131.1
2825 Male, age 18, unknown 130.1
2316 Male, age 76, right hemisphere 127.0
2407 Male, age 75, both hemispheres 123.3
Red nucleus
nTPM: 141.2
1821 Female, age 72, unknown 163.4
1865 Male, age 51, unknown 146.8
2503 Female, age 72, unknown 144.8
1954 Female, age 42, unknown 143.4
1904 Male, age 53, unknown 143.3
2769 Male, age 72, unknown 140.8
2823 Male, age 76, right hemisphere 140.8
2227 Male, age 72, unknown 140.2
2725 Female, age 75, unknown 139.0
2785 Male, age 18, unknown 137.0
2588 Male, age 74, left hemisphere 128.1
2584 Male, age 75, left hemisphere 126.7
Substantia nigra
nTPM: 148.8
2241 Male, age 72, unknown 174.5
2409 Female, age 72, unknown 164.0
1916 Female, age 42, unknown 155.6
1851 Male, age 51, unknown 152.3
1889 Female, age 72, unknown 151.4
1941 Male, age 53, unknown 147.4
2699 Male, age 18, unknown 142.7
2665 Male, age 74, both hemispheres 138.7
2583 Male, age 75, right hemisphere 134.1
2590 Female, age 75, unknown 127.0
Superior colliculus
nTPM: 134.1
2668 Female, age 75, unknown 142.0
2087 Female, age 72, unknown 138.8
2587 Male, age 74, left hemisphere 138.7
1895 Male, age 76, right hemisphere 136.6
2261 Male, age 18, unknown 135.0
1913 Female, age 42, unknown 134.1
1796 Male, age 53, unknown 131.1
1995 Male, age 72, unknown 130.0
1839 Male, age 51, unknown 128.5
2664 Male, age 75, both hemispheres 126.1
Ventral tegmental area
nTPM: 148.8
2223 Female, age 72, unknown 158.6
2410 Female, age 72, unknown 156.0
1915 Female, age 42, unknown 150.6
2218 Male, age 76, both hemispheres 145.9
1942 Male, age 51, unknown 142.1
2021 Male, age 53, unknown 139.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 266.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 266.5
Samples: 139

Max nTPM: 521.9
Min nTPM: 138.8
Std nTPM: 57.6
Median nTPM: 263.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 521.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 435.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 401.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 400.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 390.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 384.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 380.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 357.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 355.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 355.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 354.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.9
FF:10158-103A5 76 years, female 88.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 113.3
Pig sample Sample description nTPM
Midbrain
nTPM: 96.6
Samples: 4

Max nTPM: 119.0
Min nTPM: 68.9
Sample A Female 68.9
Sample B Female 89.0
Sample C Male 119.0
Sample D Male 109.4
Periaqueductal gray
nTPM: 60.1
Samples: 3

Max nTPM: 65.3
Min nTPM: 51.8
Sample B Female 63.1
Sample C Male 65.3
Sample D Male 51.8
Substantia nigra
nTPM: 86.3
Samples: 4

Max nTPM: 121.7
Min nTPM: 60.6
Sample A Female 121.7
Sample B Female 70.4
Sample C Male 92.6
Sample D Male 60.6
Superior colliculi
nTPM: 113.3
Samples: 4

Max nTPM: 150.1
Min nTPM: 80.2
Sample A Female 127.6
Sample B Female 80.2
Sample C Male 150.1
Sample D Male 95.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 99.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 99.7
Samples: 4

Max nTPM: 107.3
Min nTPM: 96.0
Sample A Male 107.3
Sample B Male 96.0
Sample C Female 98.2
Sample D Female 97.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
2292 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.1
2291 Antisense, RP_040604_01_A01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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