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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:69.1 nTPM
HPA:69.1 nTPM
GTEx:70.1 nTPM
FANTOM5:105.1 Scaled Tags Per Million
Pig:58.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 69.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.9
2411 Female, age 72, unknown 68.2
1870 Female, age 42, unknown 67.7
2586 Male, age 75, left hemisphere 64.9
1827 Male, age 72, unknown 64.4
1833 Male, age 53, unknown 63.1
1830 Male, age 51, unknown 62.4
2828 Female, age 72, unknown 60.9
2219 Male, age 76, both hemispheres 60.1
2019 Male, age 18, unknown 59.3
2666 Male, age 74, left hemisphere 58.2
Dorsal raphe nucleus
nTPM: 69.0
2298 Female, age 72, unknown 74.1
2047 Male, age 72, unknown 70.3
2016 Female, age 72, unknown 68.0
2750 Male, age 76, both hemispheres 67.5
1828 Male, age 53, unknown 64.9
Inferior colliculus
nTPM: 63.4
2097 Female, age 72, unknown 66.6
1848 Female, age 42, unknown 62.9
1890 Male, age 53, unknown 62.4
2849 Male, age 72, unknown 61.6
Median raphe nucleus
nTPM: 69.1
2220 Male, age 76, midline 69.1
Pedunculopontine tegmental nucleus
nTPM: 62.5
2334 Male, age 80, both hemispheres 65.5
1921 Female, age 85, both hemispheres 65.4
2338 Male, age 61, both hemispheres 56.8
Periaquaductal grey, anterior
nTPM: 65.1
1947 Male, age 18, unknown 68.5
1795 Male, age 51, unknown 64.2
2502 Female, age 75, unknown 62.6
Periaquaductal grey, dorsal
nTPM: 65.9
2850 Male, age 76, both hemispheres 68.3
1840 Male, age 53, unknown 67.5
2464 Female, age 72, unknown 65.2
1831 Male, age 72, unknown 62.6
Periaquaductal grey, lateral
nTPM: 65.4
2272 Male, age 74, both hemispheres 66.8
2053 Male, age 18, unknown 65.2
2140 Male, age 76, both hemispheres 64.1
Pretectal area
nTPM: 63.4
2224 Female, age 72, unknown 70.6
2273 Male, age 74, both hemispheres 68.4
2825 Male, age 18, unknown 66.2
2667 Female, age 75, unknown 65.1
1815 Male, age 53, unknown 62.8
1816 Male, age 51, unknown 62.5
2007 Male, age 72, unknown 62.1
1817 Female, age 42, unknown 61.7
1944 Female, age 72, unknown 61.4
2316 Male, age 76, right hemisphere 59.6
2407 Male, age 75, both hemispheres 57.4
Red nucleus
nTPM: 61.7
1821 Female, age 72, unknown 69.1
2503 Female, age 72, unknown 63.8
1904 Male, age 53, unknown 63.5
1865 Male, age 51, unknown 62.4
1954 Female, age 42, unknown 61.9
2725 Female, age 75, unknown 61.7
2227 Male, age 72, unknown 61.4
2769 Male, age 72, unknown 60.9
2823 Male, age 76, right hemisphere 60.4
2584 Male, age 75, left hemisphere 59.8
2785 Male, age 18, unknown 59.3
2588 Male, age 74, left hemisphere 55.7
Substantia nigra
nTPM: 63.3
2241 Male, age 72, unknown 66.9
1851 Male, age 51, unknown 66.3
1916 Female, age 42, unknown 65.7
1889 Female, age 72, unknown 63.4
1941 Male, age 53, unknown 63.1
2409 Female, age 72, unknown 62.5
2699 Male, age 18, unknown 62.5
2583 Male, age 75, right hemisphere 61.8
2590 Female, age 75, unknown 61.0
2665 Male, age 74, both hemispheres 59.9
Superior colliculus
nTPM: 62.8
2668 Female, age 75, unknown 65.3
2261 Male, age 18, unknown 63.9
1913 Female, age 42, unknown 63.7
2587 Male, age 74, left hemisphere 63.7
1796 Male, age 53, unknown 63.4
1995 Male, age 72, unknown 63.0
1839 Male, age 51, unknown 62.1
1895 Male, age 76, right hemisphere 62.1
2087 Female, age 72, unknown 60.6
2664 Male, age 75, both hemispheres 59.9
Ventral tegmental area
nTPM: 65.6
2223 Female, age 72, unknown 67.7
2410 Female, age 72, unknown 66.3
1915 Female, age 42, unknown 66.1
2021 Male, age 53, unknown 65.5
2218 Male, age 76, both hemispheres 64.0
1942 Male, age 51, unknown 63.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.1
Samples: 139

Max nTPM: 109.6
Min nTPM: 38.6
Std nTPM: 12.6
Median nTPM: 69.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 109.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 104.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 98.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 96.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 95.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 94.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 89.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 89.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 88.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 88.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 88.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 105.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.1
FF:10158-103A5 76 years, female 105.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.7
Pig sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 73.9
Min nTPM: 40.5
Sample A Female 57.6
Sample B Female 73.9
Sample C Male 40.5
Sample D Male 49.9
Periaqueductal gray
nTPM: 58.4
Samples: 3

Max nTPM: 65.4
Min nTPM: 54.1
Sample B Female 65.4
Sample C Male 55.6
Sample D Male 54.1
Substantia nigra
nTPM: 58.8
Samples: 4

Max nTPM: 73.8
Min nTPM: 47.4
Sample A Female 73.8
Sample B Female 47.4
Sample C Male 53.8
Sample D Male 60.0
Superior colliculi
nTPM: 48.2
Samples: 4

Max nTPM: 62.7
Min nTPM: 27.3
Sample A Female 62.7
Sample B Female 27.3
Sample C Male 48.0
Sample D Male 54.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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