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CACNB4
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:12.0 nTPM
HPA:12.0 nTPM
GTEx:12.9 nTPM
FANTOM5:137.9 Scaled Tags Per Million
Pig:50.5 nTPM
Mouse:60.0 nTPM
Allen mouse:4.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA015601
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.3
2846 Female, age 79, unknown 16.9
1857 Female, age 85, left hemisphere 12.6
1854 Male, age 80, left hemisphere 12.2
2290 Female, age 72, unknown 10.0
1781 Male, age 74, unknown 9.5
2288 Male, age 75, left hemisphere 7.2
2289 Male, age 61, right hemisphere 4.9
2481 Female, age 94, left hemisphere 1.5
Claustrum
nTPM: 5.7
2284 Female, age 91, both hemispheres 9.4
2392 Female, age 94, both hemispheres 8.2
2198 Male, age 80, both hemispheres 7.9
2491 Male, age 75, both hemispheres 6.6
1956 Male, age 74, unknown 5.6
2568 Male, age 61, both hemispheres 5.5
2196 Female, age 79, unknown 4.4
2645 Female, age 72, unknown 2.3
2292 Female, age 85, both hemispheres 1.5
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 9.7
1856 Female, age 91, right hemisphere 28.2
1783 Male, age 74, unknown 13.5
1806 Female, age 85, left hemisphere 12.5
2824 Male, age 61, right hemisphere 10.4
2286 Male, age 75, left hemisphere 5.5
2698 Female, age 72, unknown 5.0
2391 Female, age 94, left hemisphere 2.8
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 4.5
2393 Male, age 80, right hemisphere 11.0
2484 Female, age 94, left hemisphere 6.0
2821 Male, age 75, both hemispheres 1.2
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 4.2
1812 Female, age 91, both hemispheres 6.2
2029 Male, age 61, right hemisphere 5.7
2775 Male, age 80, right hemisphere 4.4
2195 Female, age 85, both hemispheres 2.8
1979 Male, age 74, unknown 1.7
Olfactory tubercle
nTPM: 7.0
1998 Female, age 91, both hemispheres 8.8
2856 Male, age 75, right hemisphere 7.5
2487 Female, age 94, left hemisphere 7.3
1846 Male, age 80, right hemisphere 4.3
Putamen
nTPM: 12.0
1937 Female, age 91, right hemisphere 21.5
1838 Male, age 80, right hemisphere 19.7
2466 Female, age 79, unknown 18.6
1829 Male, age 74, unknown 15.9
2489 Female, age 72, unknown 4.3
2647 Male, age 75, left hemisphere 2.4
2482 Female, age 94, left hemisphere 1.9
Septal nuclei
nTPM: 2.8
2031 Female, age 72, unknown 8.2
2629 Female, age 94, right hemisphere 4.9
2009 Female, age 91, both hemispheres 3.9
1960 Male, age 74, unknown 2.1
2199 Male, age 80, right hemisphere 0.5
2394 Male, age 61, left hemisphere 0.3
2059 Female, age 85, both hemispheres 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.0
Samples: 246

Max nTPM: 56.9
Min nTPM: 1.5
Std nTPM: 6.6
Median nTPM: 11.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 56.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 30.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 29.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 29.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 28.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 25.3
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 24.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 23.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 23.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 23.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 23.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 12.9
Samples: 246

Max nTPM: 31.7
Min nTPM: 0.9
Std nTPM: 5.9
Median nTPM: 13.5
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 31.7
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 26.3
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 25.4
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 24.7
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 24.3
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 24.0
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 23.1
GTEX-1GTWX-0011-R6a-SM-A96RN 60-69 years, male 22.8
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 22.6
GTEX-1H1DG-0011-R6a-SM-A9SK8 70-79 years, male 22.6
GTEX-132Q8-0011-R6a-SM-5K7YN 60-69 years, male 22.5
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Brain - Putamen (basal ganglia)
Average nTPM: 11.2
Samples: 205

Max nTPM: 33.3
Min nTPM: 0.9
Std nTPM: 6.0
Median nTPM: 11.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 33.3
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 30.9
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 27.4
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 25.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 23.5
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 22.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 22.5
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 22.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 22.0
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 21.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 21.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 137.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 97.4
FF:10164-103B2 76 years, female 97.4
Globus pallidus
Scaled Tags Per Million: 30.2
FF:10175-103C4 60 years, female 49.7
FF:10161-103A8 76 years, female 10.8
Nucleus accumbens
Scaled Tags Per Million: 90.1
FF:10037-101F1 23-56 years, mixed 90.1
Putamen
Scaled Tags Per Million: 137.9
FF:10176-103C5 60 years, female 137.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 50.5
Pig sample Sample description nTPM
Caudate
nTPM: 44.5
Samples: 4

Max nTPM: 50.9
Min nTPM: 38.3
Sample A Female 38.3
Sample B Female 41.8
Sample C Male 47.0
Sample D Male 50.9
Putamen
nTPM: 50.5
Samples: 4

Max nTPM: 78.9
Min nTPM: 24.2
Sample A Female 24.2
Sample B Female 50.3
Sample C Male 78.9
Sample D Male 48.7
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 34.1
Min nTPM: 19.1
Sample A Female 34.1
Sample B Female 33.1
Sample C Male 19.1
Sample D Male 21.3
Ventral pallidum
nTPM: 35.1
Samples: 4

Max nTPM: 51.9
Min nTPM: 21.1
Sample A Female 51.9
Sample B Female 33.2
Sample C Male 21.1
Sample D Male 34.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 60.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 60.0
Samples: 4

Max nTPM: 64.7
Min nTPM: 55.2
Sample A Male 64.7
Sample B Male 59.8
Sample C Female 60.1
Sample D Female 55.2
Septum
nTPM: 41.5
Samples: 4

Max nTPM: 45.3
Min nTPM: 37.3
Sample A Male 37.3
Sample B Male 45.3
Sample C Female 39.7
Sample D Female 43.5
Ventral forebrain
nTPM: 49.3
Samples: 4

Max nTPM: 54.4
Min nTPM: 44.6
Sample A Male 51.1
Sample B Male 47.0
Sample C Female 44.6
Sample D Female 54.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 4.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 4.9
70795841 Antisense, RP_050712_02_A12, Mouse strain C57BL/6J (56 days, male) 6.9
1680 Antisense, RP_040507_02_G05, Mouse strain C57BL/6J (56 days, male) 2.8
1679 Antisense, RP_040507_02_G05, Mouse strain C57BL/6J (56 days, male) 1.0
Pallidum
Expression energy: 2.8
70795841 Antisense, RP_050712_02_A12, Mouse strain C57BL/6J (56 days, male) 3.8
1680 Antisense, RP_040507_02_G05, Mouse strain C57BL/6J (56 days, male) 1.8
1679 Antisense, RP_040507_02_G05, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.