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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.5 nTPM
HPA:40.5 nTPM
GTEx:85.5 nTPM
FANTOM5:140.2 Scaled Tags Per Million
Pig:80.6 nTPM
Mouse:284.1 nTPM
Allen mouse:8.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 30.8
2290 Female, age 72, unknown 33.9
1857 Female, age 85, left hemisphere 33.8
2288 Male, age 75, left hemisphere 33.1
1854 Male, age 80, left hemisphere 30.3
2289 Male, age 61, right hemisphere 30.2
1781 Male, age 74, unknown 29.9
2481 Female, age 94, left hemisphere 29.7
2846 Female, age 79, unknown 26.0
Claustrum
nTPM: 22.9
2196 Female, age 79, unknown 28.7
2491 Male, age 75, both hemispheres 26.8
2392 Female, age 94, both hemispheres 25.6
1956 Male, age 74, unknown 22.9
2284 Female, age 91, both hemispheres 22.0
2198 Male, age 80, both hemispheres 21.7
2568 Male, age 61, both hemispheres 21.1
2292 Female, age 85, both hemispheres 19.0
2645 Female, age 72, unknown 18.3
Globus pallidus, externus
nTPM: 24.3
2772 Female, age 79, unknown 27.8
2395 Male, age 75, both hemispheres 26.5
1996 Male, age 80, right hemisphere 25.1
2646 Male, age 61, right hemisphere 23.6
2567 Female, age 72, unknown 18.4
Globus pallidus, internus
nTPM: 25.5
2287 Male, age 75, right hemisphere 32.4
2483 Female, age 94, right hemisphere 29.5
2778 Female, age 91, both hemispheres 26.9
2566 Female, age 72, unknown 23.1
2111 Female, age 85, right hemisphere 22.8
1818 Male, age 74, unknown 22.5
2037 Male, age 80, right hemisphere 21.5
Nucleus accumbens
nTPM: 40.5
1856 Female, age 91, right hemisphere 54.4
2824 Male, age 61, right hemisphere 44.7
1783 Male, age 74, unknown 43.3
1806 Female, age 85, left hemisphere 42.6
2698 Female, age 72, unknown 41.6
2732 Male, age 80, right hemisphere 39.7
2286 Male, age 75, left hemisphere 33.8
2391 Female, age 94, left hemisphere 24.4
Nucleus basalis of Meynert
nTPM: 25.9
2484 Female, age 94, left hemisphere 28.0
2821 Male, age 75, both hemispheres 26.4
2393 Male, age 80, right hemisphere 24.9
2569 Male, age 61, both hemispheres 24.2
Nucleus of the diagonal band
nTPM: 39.3
1979 Male, age 74, unknown 53.7
2195 Female, age 85, both hemispheres 40.3
2775 Male, age 80, right hemisphere 35.1
1812 Female, age 91, both hemispheres 34.9
2029 Male, age 61, right hemisphere 32.6
Olfactory tubercle
nTPM: 31.5
2487 Female, age 94, left hemisphere 36.8
1998 Female, age 91, both hemispheres 32.9
1846 Male, age 80, right hemisphere 30.1
2856 Male, age 75, right hemisphere 26.2
Putamen
nTPM: 27.6
1937 Female, age 91, right hemisphere 37.7
1838 Male, age 80, right hemisphere 33.0
2482 Female, age 94, left hemisphere 28.6
2466 Female, age 79, unknown 27.2
2647 Male, age 75, left hemisphere 23.1
1829 Male, age 74, unknown 22.9
2489 Female, age 72, unknown 20.7
Septal nuclei
nTPM: 36.8
1960 Male, age 74, unknown 42.7
2059 Female, age 85, both hemispheres 39.0
2009 Female, age 91, both hemispheres 37.0
2031 Female, age 72, unknown 35.3
2394 Male, age 61, left hemisphere 35.3
2199 Male, age 80, right hemisphere 35.0
2629 Female, age 94, right hemisphere 33.2

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 85.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.6
Samples: 246

Max nTPM: 116.5
Min nTPM: 19.2
Std nTPM: 14.9
Median nTPM: 40.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 116.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 103.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 82.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 81.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 79.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 79.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 77.3
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 75.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 75.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 74.0
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 71.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 85.5
Samples: 246

Max nTPM: 219.3
Min nTPM: 17.7
Std nTPM: 38.8
Median nTPM: 83.1
GTEX-1F75W-0011-R6a-SM-9QEI5 60-69 years, male 219.3
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 185.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 182.5
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 174.9
GTEX-14PJM-0011-R6a-SM-6872G 50-59 years, female 171.3
GTEX-15ER7-0011-R6a-SM-6M46M 20-29 years, female 166.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 164.0
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 161.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 161.5
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 161.4
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 160.8
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Brain - Putamen (basal ganglia)
Average nTPM: 38.9
Samples: 205

Max nTPM: 116.8
Min nTPM: 16.1
Std nTPM: 14.8
Median nTPM: 35.0
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 116.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 94.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 90.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 88.4
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 73.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 73.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 70.9
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 70.5
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 68.0
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 67.6
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 67.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 104.2
FF:10164-103B2 76 years, female 104.2
Globus pallidus
Scaled Tags Per Million: 31.2
FF:10175-103C4 60 years, female 40.2
FF:10161-103A8 76 years, female 22.2
Nucleus accumbens
Scaled Tags Per Million: 84.3
FF:10037-101F1 23-56 years, mixed 84.3
Putamen
Scaled Tags Per Million: 140.2
FF:10176-103C5 60 years, female 140.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 80.6
Pig sample Sample description nTPM
Caudate
nTPM: 53.3
Samples: 4

Max nTPM: 59.7
Min nTPM: 39.8
Sample A Female 55.9
Sample B Female 57.9
Sample C Male 59.7
Sample D Male 39.8
Putamen
nTPM: 46.1
Samples: 4

Max nTPM: 53.6
Min nTPM: 38.3
Sample A Female 43.8
Sample B Female 38.3
Sample C Male 53.6
Sample D Male 48.6
Septum
nTPM: 80.6
Samples: 4

Max nTPM: 102.5
Min nTPM: 49.7
Sample A Female 102.5
Sample B Female 74.2
Sample C Male 95.9
Sample D Male 49.7
Ventral pallidum
nTPM: 61.1
Samples: 4

Max nTPM: 71.9
Min nTPM: 55.9
Sample A Female 71.9
Sample B Female 57.9
Sample C Male 58.6
Sample D Male 55.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 284.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 104.8
Samples: 4

Max nTPM: 118.7
Min nTPM: 93.0
Sample A Male 100.0
Sample B Male 118.7
Sample C Female 93.0
Sample D Female 107.6
Septum
nTPM: 284.1
Samples: 4

Max nTPM: 305.3
Min nTPM: 270.9
Sample A Male 288.9
Sample B Male 305.3
Sample C Female 271.1
Sample D Female 270.9
Ventral forebrain
nTPM: 137.4
Samples: 4

Max nTPM: 163.3
Min nTPM: 115.1
Sample A Male 115.1
Sample B Male 163.3
Sample C Female 151.1
Sample D Female 120.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.0
689 Antisense, RP_040315_01_07, Mouse strain C57BL/6J (56 days, male) 11.9
688 Antisense, RP_040315_01_07, Mouse strain C57BL/6J (56 days, male) 9.8
71764488 Antisense, RP_050926_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 8.1
688 Antisense, RP_040315_01_07, Mouse strain C57BL/6J (56 days, male) 16.3
689 Antisense, RP_040315_01_07, Mouse strain C57BL/6J (56 days, male) 16.0
71764488 Antisense, RP_050926_01_C06, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.