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SPATA13
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.8 nTPM
HPA:31.8 nTPM
GTEx:18.2 nTPM
FANTOM5:119.9 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 31.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.8
1830 Male, age 51, unknown 31.9
1833 Male, age 53, unknown 30.8
1870 Female, age 42, unknown 28.2
2019 Male, age 18, unknown 27.6
2411 Female, age 72, unknown 25.6
2828 Female, age 72, unknown 24.9
2586 Male, age 75, left hemisphere 23.0
2666 Male, age 74, left hemisphere 22.2
1827 Male, age 72, unknown 19.3
2219 Male, age 76, both hemispheres 14.7
Dorsal raphe nucleus
nTPM: 22.7
2750 Male, age 76, both hemispheres 28.3
2016 Female, age 72, unknown 24.6
1828 Male, age 53, unknown 24.5
2298 Female, age 72, unknown 18.6
2047 Male, age 72, unknown 17.8
Inferior colliculus
nTPM: 19.0
1890 Male, age 53, unknown 21.1
1848 Female, age 42, unknown 20.8
2849 Male, age 72, unknown 18.3
2097 Female, age 72, unknown 15.7
Median raphe nucleus
nTPM: 21.6
2220 Male, age 76, midline 21.6
Pedunculopontine tegmental nucleus
nTPM: 27.4
2338 Male, age 61, both hemispheres 40.7
2334 Male, age 80, both hemispheres 24.3
1921 Female, age 85, both hemispheres 17.1
Periaquaductal grey, anterior
nTPM: 22.8
1947 Male, age 18, unknown 25.2
2502 Female, age 75, unknown 22.7
1795 Male, age 51, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 21.9
2850 Male, age 76, both hemispheres 33.4
1831 Male, age 72, unknown 20.8
2464 Female, age 72, unknown 20.5
1840 Male, age 53, unknown 13.0
Periaquaductal grey, lateral
nTPM: 26.6
2140 Male, age 76, both hemispheres 36.4
2272 Male, age 74, both hemispheres 22.0
2053 Male, age 18, unknown 21.4
Pretectal area
nTPM: 20.5
2407 Male, age 75, both hemispheres 29.2
2316 Male, age 76, right hemisphere 28.9
2667 Female, age 75, unknown 22.4
2273 Male, age 74, both hemispheres 21.8
1815 Male, age 53, unknown 21.6
2825 Male, age 18, unknown 20.8
2224 Female, age 72, unknown 19.6
2007 Male, age 72, unknown 17.5
1817 Female, age 42, unknown 17.1
1944 Female, age 72, unknown 14.5
1816 Male, age 51, unknown 11.8
Red nucleus
nTPM: 31.8
1904 Male, age 53, unknown 39.6
1865 Male, age 51, unknown 38.0
2769 Male, age 72, unknown 37.5
2227 Male, age 72, unknown 35.5
2503 Female, age 72, unknown 33.1
1954 Female, age 42, unknown 31.8
2785 Male, age 18, unknown 31.0
1821 Female, age 72, unknown 29.7
2823 Male, age 76, right hemisphere 29.2
2588 Male, age 74, left hemisphere 28.2
2725 Female, age 75, unknown 25.0
2584 Male, age 75, left hemisphere 23.2
Substantia nigra
nTPM: 24.3
2590 Female, age 75, unknown 31.3
2699 Male, age 18, unknown 29.8
2583 Male, age 75, right hemisphere 28.2
1851 Male, age 51, unknown 25.4
2665 Male, age 74, both hemispheres 22.6
1916 Female, age 42, unknown 22.2
1941 Male, age 53, unknown 21.6
2241 Male, age 72, unknown 21.5
2409 Female, age 72, unknown 21.3
1889 Female, age 72, unknown 19.0
Superior colliculus
nTPM: 22.2
1995 Male, age 72, unknown 32.7
1913 Female, age 42, unknown 31.5
1839 Male, age 51, unknown 23.8
2587 Male, age 74, left hemisphere 22.9
1895 Male, age 76, right hemisphere 21.0
2664 Male, age 75, both hemispheres 20.6
2668 Female, age 75, unknown 18.5
1796 Male, age 53, unknown 17.8
2087 Female, age 72, unknown 17.2
2261 Male, age 18, unknown 16.1
Ventral tegmental area
nTPM: 24.4
2223 Female, age 72, unknown 30.7
2410 Female, age 72, unknown 25.1
2021 Male, age 53, unknown 24.2
1942 Male, age 51, unknown 23.6
2218 Male, age 76, both hemispheres 21.8
1915 Female, age 42, unknown 21.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.2
Samples: 139

Max nTPM: 43.5
Min nTPM: 7.0
Std nTPM: 6.8
Median nTPM: 16.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 43.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 39.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 38.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 35.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 34.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 32.0
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 31.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 31.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.0
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 29.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 28.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 119.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 119.9
FF:10158-103A5 76 years, female 119.9

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