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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		43.328
RNA expressioni
Consensus:90.2 nTPM
HPA:90.2 nTPM
GTEx:71.4 nTPM
FANTOM5:165.2 Scaled Tags Per Million
Pig:106.9 nTPM
Mouse:132.7 nTPM
Allen mouse:6.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041528Antibody HPA041690
Glial cells MediumHigh
Neuronal cells MediumMedium





HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA041690
Hippocampal formation mean intensity 43.328
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 20.045
Molecular layer of the dentate gyrus 5.605
Granular dentate gyrus 10.110
CA1 - oriens layer 12.817
CA1 - pyramidal layer 22.861
CA1 - radiatum layer 6.474
CA2 - oriens layer 11.834
CA2 - pyramidal layer 35.767
CA2 - radiatum layer 12.351
CA3 - oriens layer 14.843
CA3 - pyramidal layer 31.006
CA3 - radiatum layer 8.148
Stratum lucidum 5.310
Lacunosum moleculare 7.006
Subiculum 28.530

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 90.2
Sample id Sample description nTPM
Hippocampus
nTPM: 70.1
2529 Female, age 94, left hemisphere 79.7
1898 Male, age 80, left hemisphere 76.0
2148 Female, age 91, left hemisphere 71.9
1911 Female, age 85, right hemisphere 70.4
2621 Female, age 67, right hemisphere 68.3
1855 Male, age 76, left hemisphere 54.2
Dentate gyrus
nTPM: 64.6
1927 Female, age 91, both hemispheres 73.3
2246 Female, age 85, both hemispheres 70.7
2528 Male, age 74, both hemispheres 69.7
2530 Female, age 94, left hemisphere 61.9
2010 Male, age 76, both hemispheres 56.7
2531 Female, age 67, both hemispheres 55.5
Entorhinal gyrus
nTPM: 83.5
1787 Male, age 76, left hemisphere 96.3
2764 Male, age 80, right hemisphere 92.3
1938 Female, age 85, left hemisphere 88.5
2613 Female, age 94, left hemisphere 82.4
2117 Female, age 91, right hemisphere 71.7
2686 Male, age 75, right hemisphere 70.0
Hippocampus, CA1
nTPM: 70.8
2749 Male, age 80, left hemisphere 88.9
2527 Male, age 74, both hemispheres 74.3
2082 Female, age 91, right hemisphere 72.1
1873 Female, age 85, both hemispheres 69.8
2045 Male, age 76, both hemispheres 49.0
Hippocampus, CA2
nTPM: 75.8
1892 Male, age 76, both hemispheres 84.6
1963 Male, age 80, left hemisphere 83.8
2437 Female, age 94, left hemisphere 80.7
2113 Female, age 91, right hemisphere 74.1
2249 Male, age 74, both hemispheres 70.5
1940 Female, age 85, left hemisphere 61.3
Hippocampus, CA3
nTPM: 70.0
2137 Male, age 80, left hemisphere 76.5
2436 Male, age 74, both hemispheres 72.5
1891 Female, age 85, both hemispheres 70.8
1867 Male, age 76, both hemispheres 70.3
2861 Female, age 67, both hemispheres 67.3
2620 Female, age 94, left hemisphere 62.5
Parahippocampal cortex
nTPM: 80.3
1850 Male, age 80, both hemispheres 90.0
2622 Female, age 67, right hemisphere 86.7
1990 Female, age 91, right hemisphere 85.2
2250 Female, age 67, right hemisphere 83.0
2692 Male, age 74, both hemispheres 82.9
1933 Female, age 85, both hemispheres 81.3
2245 Female, age 91, both hemispheres 79.3
2693 Female, age 94, both hemispheres 76.0
2532 Female, age 72, left hemisphere 75.1
2018 Male, age 76, both hemispheres 63.3
Perirhinal gyrus
nTPM: 90.2
1794 Male, age 80, right hemisphere 102.6
1847 Female, age 91, left hemisphere 99.9
2848 Male, age 76, right hemisphere 90.9
1841 Female, age 85, right hemisphere 86.0
2521 Female, age 94, right hemisphere 71.6
Subiculum
nTPM: 74.7
2619 Male, age 74, both hemispheres 85.1
2438 Female, age 94, left hemisphere 83.1
1977 Female, age 85, both hemispheres 81.6
1901 Male, age 80, both hemispheres 74.1
2729 Female, age 91, right hemisphere 68.8
2042 Male, age 76, both hemispheres 55.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 71.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 71.4
Samples: 197

Max nTPM: 182.0
Min nTPM: 8.6
Std nTPM: 25.7
Median nTPM: 67.6
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 182.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 162.1
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 157.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 155.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 144.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 138.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 136.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 136.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 120.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 117.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 115.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 165.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 165.2
FF:10169-103B7 60 years, female 189.3
FF:10153-102I9 76 years, female 141.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 106.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 68.6
Samples: 4

Max nTPM: 81.4
Min nTPM: 51.7
Sample A Female 73.3
Sample B Female 68.0
Sample C Male 81.4
Sample D Male 51.7
Entorhinal cortex
nTPM: 90.1
Samples: 4

Max nTPM: 104.8
Min nTPM: 76.2
Sample A Female 80.0
Sample B Female 99.4
Sample C Male 104.8
Sample D Male 76.2
Subiculum
nTPM: 106.9
Samples: 4

Max nTPM: 115.5
Min nTPM: 87.8
Sample A Female 112.2
Sample B Female 112.0
Sample C Male 115.5
Sample D Male 87.8
Ventral hippocampus
nTPM: 85.6
Samples: 4

Max nTPM: 117.4
Min nTPM: 71.0
Sample A Female 71.0
Sample B Female 81.9
Sample C Male 117.4
Sample D Male 72.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 132.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 132.7
Samples: 4

Max nTPM: 139.0
Min nTPM: 123.4
Sample A Male 130.0
Sample B Male 123.4
Sample C Female 138.3
Sample D Female 139.0
Hippocampal formation
nTPM: 123.0
Samples: 4

Max nTPM: 127.8
Min nTPM: 115.6
Sample A Male 127.8
Sample B Male 115.6
Sample C Female 121.6
Sample D Female 127.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.1
72079931 Antisense, RP_051017_03_B07, Mouse strain C57BL/6J (56 days, male) 6.9
68918934 Antisense, RP_050301_02_C02, Mouse strain C57BL/6J (56 days, male) 5.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.