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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.0 nTPM
HPA:17.0 nTPM
GTEx:11.6 nTPM
FANTOM5:8.3 Scaled Tags Per Million
Mouse:50.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.8
2586 Male, age 75, left hemisphere 26.4
2219 Male, age 76, both hemispheres 18.5
2666 Male, age 74, left hemisphere 11.4
1827 Male, age 72, unknown 9.6
2828 Female, age 72, unknown 5.8
1833 Male, age 53, unknown 4.4
1870 Female, age 42, unknown 4.2
1830 Male, age 51, unknown 4.0
2411 Female, age 72, unknown 3.8
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 2.0
1828 Male, age 53, unknown 4.1
2047 Male, age 72, unknown 3.0
2016 Female, age 72, unknown 1.9
2750 Male, age 76, both hemispheres 1.1
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 6.7
1848 Female, age 42, unknown 13.9
2849 Male, age 72, unknown 8.7
2097 Female, age 72, unknown 2.8
1890 Male, age 53, unknown 1.3
Median raphe nucleus
nTPM: 0.0
2220 Male, age 76, midline 0.0
Pedunculopontine tegmental nucleus
nTPM: 3.8
2338 Male, age 61, both hemispheres 4.9
1921 Female, age 85, both hemispheres 3.8
2334 Male, age 80, both hemispheres 2.8
Periaquaductal grey, anterior
nTPM: 4.6
1947 Male, age 18, unknown 6.0
1795 Male, age 51, unknown 4.3
2502 Female, age 75, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 2.9
1840 Male, age 53, unknown 5.9
2464 Female, age 72, unknown 4.3
1831 Male, age 72, unknown 1.6
2850 Male, age 76, both hemispheres 0.0
Periaquaductal grey, lateral
nTPM: 1.9
2053 Male, age 18, unknown 5.6
2140 Male, age 76, both hemispheres 0.0
2272 Male, age 74, both hemispheres 0.0
Pretectal area
nTPM: 2.0
2825 Male, age 18, unknown 6.9
1816 Male, age 51, unknown 5.6
2407 Male, age 75, both hemispheres 4.2
2316 Male, age 76, right hemisphere 2.2
1944 Female, age 72, unknown 1.4
2007 Male, age 72, unknown 1.3
1817 Female, age 42, unknown 0.2
1815 Male, age 53, unknown 0.0
2224 Female, age 72, unknown 0.0
2273 Male, age 74, both hemispheres 0.0
2667 Female, age 75, unknown 0.0
Red nucleus
nTPM: 3.8
2584 Male, age 75, left hemisphere 16.3
2725 Female, age 75, unknown 11.2
2588 Male, age 74, left hemisphere 9.1
2227 Male, age 72, unknown 3.2
2769 Male, age 72, unknown 2.3
1821 Female, age 72, unknown 2.1
2503 Female, age 72, unknown 1.5
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
1954 Female, age 42, unknown 0.0
2785 Male, age 18, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 17.0
1941 Male, age 53, unknown 48.4
1916 Female, age 42, unknown 35.0
2699 Male, age 18, unknown 25.0
1851 Male, age 51, unknown 19.4
2241 Male, age 72, unknown 14.6
2409 Female, age 72, unknown 8.5
2665 Male, age 74, both hemispheres 7.7
2583 Male, age 75, right hemisphere 5.9
1889 Female, age 72, unknown 5.6
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 6.0
2668 Female, age 75, unknown 21.5
1895 Male, age 76, right hemisphere 11.8
2261 Male, age 18, unknown 5.4
1839 Male, age 51, unknown 5.2
1796 Male, age 53, unknown 4.7
2087 Female, age 72, unknown 4.7
2664 Male, age 75, both hemispheres 3.8
2587 Male, age 74, left hemisphere 3.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 10.6
1915 Female, age 42, unknown 20.8
2218 Male, age 76, both hemispheres 15.6
2410 Female, age 72, unknown 9.6
1942 Male, age 51, unknown 7.9
2021 Male, age 53, unknown 5.1
2223 Female, age 72, unknown 4.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 56.7
Min nTPM: 1.0
Std nTPM: 8.6
Median nTPM: 9.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 56.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 47.3
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 33.4
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 33.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 32.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 29.7
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 25.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 25.4
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 25.4
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 24.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.3
FF:10158-103A5 76 years, female 8.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.1
Samples: 4

Max nTPM: 54.6
Min nTPM: 42.7
Sample A Male 42.7
Sample B Male 53.8
Sample C Female 54.6
Sample D Female 49.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
69540290 Antisense, RP_050426_01_E01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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