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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA:20.7 nTPM
GTEx:28.2 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:21.5 nTPM
Mouse:6.4 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 20.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 17.8
2586 Male, age 75, left hemisphere 19.8
1870 Female, age 42, unknown 19.5
2828 Female, age 72, unknown 19.2
2019 Male, age 18, unknown 18.5
2219 Male, age 76, both hemispheres 17.6
1833 Male, age 53, unknown 17.4
1827 Male, age 72, unknown 17.0
1830 Male, age 51, unknown 17.0
2411 Female, age 72, unknown 16.4
2666 Male, age 74, left hemisphere 15.4
Dorsal raphe nucleus
nTPM: 17.9
2750 Male, age 76, both hemispheres 19.2
1828 Male, age 53, unknown 18.3
2047 Male, age 72, unknown 17.7
2016 Female, age 72, unknown 17.6
2298 Female, age 72, unknown 17.0
Inferior colliculus
nTPM: 17.3
1890 Male, age 53, unknown 17.8
2097 Female, age 72, unknown 17.8
1848 Female, age 42, unknown 17.1
2849 Male, age 72, unknown 16.4
Median raphe nucleus
nTPM: 20.7
2220 Male, age 76, midline 20.7
Pedunculopontine tegmental nucleus
nTPM: 19.1
2338 Male, age 61, both hemispheres 20.3
2334 Male, age 80, both hemispheres 19.9
1921 Female, age 85, both hemispheres 17.2
Periaquaductal grey, anterior
nTPM: 18.1
2502 Female, age 75, unknown 18.3
1947 Male, age 18, unknown 18.2
1795 Male, age 51, unknown 17.7
Periaquaductal grey, dorsal
nTPM: 16.7
2850 Male, age 76, both hemispheres 19.2
1831 Male, age 72, unknown 16.4
1840 Male, age 53, unknown 15.9
2464 Female, age 72, unknown 15.3
Periaquaductal grey, lateral
nTPM: 18.4
2140 Male, age 76, both hemispheres 19.6
2272 Male, age 74, both hemispheres 19.2
2053 Male, age 18, unknown 16.5
Pretectal area
nTPM: 18.2
2224 Female, age 72, unknown 19.3
2273 Male, age 74, both hemispheres 19.3
2667 Female, age 75, unknown 19.2
1944 Female, age 72, unknown 18.6
2316 Male, age 76, right hemisphere 18.6
2007 Male, age 72, unknown 18.3
1817 Female, age 42, unknown 18.0
1815 Male, age 53, unknown 17.6
1816 Male, age 51, unknown 17.4
2825 Male, age 18, unknown 16.9
2407 Male, age 75, both hemispheres 16.7
Red nucleus
nTPM: 19.0
2227 Male, age 72, unknown 20.9
2769 Male, age 72, unknown 20.6
1865 Male, age 51, unknown 20.5
1904 Male, age 53, unknown 20.3
2503 Female, age 72, unknown 19.8
1954 Female, age 42, unknown 19.2
1821 Female, age 72, unknown 19.1
2785 Male, age 18, unknown 19.1
2725 Female, age 75, unknown 18.0
2823 Male, age 76, right hemisphere 17.2
2588 Male, age 74, left hemisphere 16.6
2584 Male, age 75, left hemisphere 16.4
Substantia nigra
nTPM: 18.3
1916 Female, age 42, unknown 20.8
1851 Male, age 51, unknown 19.2
2699 Male, age 18, unknown 19.1
2590 Female, age 75, unknown 18.9
2665 Male, age 74, both hemispheres 18.4
1941 Male, age 53, unknown 18.0
1889 Female, age 72, unknown 17.5
2409 Female, age 72, unknown 17.2
2583 Male, age 75, right hemisphere 17.1
2241 Male, age 72, unknown 16.7
Superior colliculus
nTPM: 17.2
1913 Female, age 42, unknown 18.7
2261 Male, age 18, unknown 18.5
1796 Male, age 53, unknown 18.0
2087 Female, age 72, unknown 17.6
2587 Male, age 74, left hemisphere 17.6
1995 Male, age 72, unknown 17.5
1895 Male, age 76, right hemisphere 16.4
1839 Male, age 51, unknown 16.3
2668 Female, age 75, unknown 16.3
2664 Male, age 75, both hemispheres 15.3
Ventral tegmental area
nTPM: 18.7
1915 Female, age 42, unknown 19.9
2223 Female, age 72, unknown 19.8
1942 Male, age 51, unknown 19.1
2218 Male, age 76, both hemispheres 19.0
2021 Male, age 53, unknown 17.5
2410 Female, age 72, unknown 17.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.2
Samples: 139

Max nTPM: 69.5
Min nTPM: 12.5
Std nTPM: 7.5
Median nTPM: 26.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 69.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 54.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 51.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 48.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 41.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 41.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 40.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 40.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 38.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 37.6
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 37.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 42.4
FF:10158-103A5 76 years, female 42.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.5
Pig sample Sample description nTPM
Midbrain
nTPM: 21.5
Samples: 4

Max nTPM: 31.0
Min nTPM: 15.7
Sample A Female 31.0
Sample B Female 21.4
Sample C Male 18.0
Sample D Male 15.7
Periaqueductal gray
nTPM: 17.4
Samples: 3

Max nTPM: 19.7
Min nTPM: 14.6
Sample B Female 17.8
Sample C Male 19.7
Sample D Male 14.6
Substantia nigra
nTPM: 19.1
Samples: 4

Max nTPM: 24.9
Min nTPM: 16.2
Sample A Female 24.9
Sample B Female 16.7
Sample C Male 18.7
Sample D Male 16.2
Superior colliculi
nTPM: 20.4
Samples: 4

Max nTPM: 25.2
Min nTPM: 17.8
Sample A Female 25.2
Sample B Female 18.8
Sample C Male 19.9
Sample D Male 17.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 6.7
Min nTPM: 6.2
Sample A Male 6.3
Sample B Male 6.7
Sample C Female 6.5
Sample D Female 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.