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AIFM3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA:43.7 nTPM
GTEx:36.1 nTPM
FANTOM5:7.7 Scaled Tags Per Million
Pig:20.5 nTPM
Mouse:28.0 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 43.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.6
2586 Male, age 75, left hemisphere 68.6
2019 Male, age 18, unknown 56.5
2828 Female, age 72, unknown 54.1
1827 Male, age 72, unknown 43.4
2666 Male, age 74, left hemisphere 39.3
2219 Male, age 76, both hemispheres 30.3
1833 Male, age 53, unknown 27.2
2411 Female, age 72, unknown 27.0
1830 Male, age 51, unknown 25.3
1870 Female, age 42, unknown 24.1
Dorsal raphe nucleus
nTPM: 31.3
1828 Male, age 53, unknown 38.0
2016 Female, age 72, unknown 35.9
2298 Female, age 72, unknown 32.6
2047 Male, age 72, unknown 30.6
2750 Male, age 76, both hemispheres 19.3
Inferior colliculus
nTPM: 38.7
1848 Female, age 42, unknown 39.7
1890 Male, age 53, unknown 39.4
2097 Female, age 72, unknown 38.2
2849 Male, age 72, unknown 37.4
Median raphe nucleus
nTPM: 15.8
2220 Male, age 76, midline 15.8
Pedunculopontine tegmental nucleus
nTPM: 21.4
1921 Female, age 85, both hemispheres 28.8
2334 Male, age 80, both hemispheres 23.2
2338 Male, age 61, both hemispheres 12.3
Periaquaductal grey, anterior
nTPM: 36.6
2502 Female, age 75, unknown 42.4
1795 Male, age 51, unknown 41.8
1947 Male, age 18, unknown 25.6
Periaquaductal grey, dorsal
nTPM: 34.3
2464 Female, age 72, unknown 38.6
1840 Male, age 53, unknown 36.9
1831 Male, age 72, unknown 35.1
2850 Male, age 76, both hemispheres 26.6
Periaquaductal grey, lateral
nTPM: 29.6
2140 Male, age 76, both hemispheres 32.7
2053 Male, age 18, unknown 31.0
2272 Male, age 74, both hemispheres 25.2
Pretectal area
nTPM: 43.7
1944 Female, age 72, unknown 66.3
1816 Male, age 51, unknown 65.0
2007 Male, age 72, unknown 61.7
1817 Female, age 42, unknown 54.7
1815 Male, age 53, unknown 46.6
2667 Female, age 75, unknown 35.9
2316 Male, age 76, right hemisphere 35.5
2273 Male, age 74, both hemispheres 31.5
2407 Male, age 75, both hemispheres 29.8
2825 Male, age 18, unknown 27.6
2224 Female, age 72, unknown 26.2
Red nucleus
nTPM: 36.9
2785 Male, age 18, unknown 56.1
2503 Female, age 72, unknown 44.8
2588 Male, age 74, left hemisphere 41.6
2823 Male, age 76, right hemisphere 38.6
1954 Female, age 42, unknown 37.4
2769 Male, age 72, unknown 36.9
2227 Male, age 72, unknown 35.4
1865 Male, age 51, unknown 33.3
1821 Female, age 72, unknown 31.3
1904 Male, age 53, unknown 29.8
2725 Female, age 75, unknown 29.8
2584 Male, age 75, left hemisphere 28.0
Substantia nigra
nTPM: 31.8
1889 Female, age 72, unknown 43.7
2583 Male, age 75, right hemisphere 42.2
2665 Male, age 74, both hemispheres 36.9
2590 Female, age 75, unknown 36.5
1916 Female, age 42, unknown 31.1
1941 Male, age 53, unknown 30.7
1851 Male, age 51, unknown 28.6
2699 Male, age 18, unknown 25.2
2409 Female, age 72, unknown 23.6
2241 Male, age 72, unknown 19.2
Superior colliculus
nTPM: 43.4
2087 Female, age 72, unknown 60.8
2664 Male, age 75, both hemispheres 54.3
2261 Male, age 18, unknown 44.1
1796 Male, age 53, unknown 43.4
1895 Male, age 76, right hemisphere 42.6
2668 Female, age 75, unknown 41.9
1995 Male, age 72, unknown 39.7
2587 Male, age 74, left hemisphere 39.6
1839 Male, age 51, unknown 36.8
1913 Female, age 42, unknown 30.8
Ventral tegmental area
nTPM: 25.7
2410 Female, age 72, unknown 32.3
1915 Female, age 42, unknown 28.2
1942 Male, age 51, unknown 27.2
2021 Male, age 53, unknown 26.1
2218 Male, age 76, both hemispheres 21.6
2223 Female, age 72, unknown 19.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.1
Samples: 139

Max nTPM: 94.5
Min nTPM: 4.5
Std nTPM: 17.1
Median nTPM: 35.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 94.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 85.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 76.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 75.7
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 73.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 71.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 68.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 64.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 61.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 60.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 60.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.7
FF:10158-103A5 76 years, female 7.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.5
Pig sample Sample description nTPM
Midbrain
nTPM: 11.5
Samples: 4

Max nTPM: 16.8
Min nTPM: 5.4
Sample A Female 5.4
Sample B Female 12.7
Sample C Male 16.8
Sample D Male 10.9
Periaqueductal gray
nTPM: 14.4
Samples: 3

Max nTPM: 17.6
Min nTPM: 11.1
Sample B Female 14.6
Sample C Male 17.6
Sample D Male 11.1
Substantia nigra
nTPM: 10.6
Samples: 4

Max nTPM: 12.6
Min nTPM: 8.8
Sample A Female 9.5
Sample B Female 12.6
Sample C Male 11.4
Sample D Male 8.8
Superior colliculi
nTPM: 20.5
Samples: 4

Max nTPM: 34.8
Min nTPM: 10.7
Sample A Female 15.4
Sample B Female 34.8
Sample C Male 20.9
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 30.6
Min nTPM: 24.9
Sample A Male 30.6
Sample B Male 24.9
Sample C Female 27.7
Sample D Female 28.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.