ABOUTMENU
HELP
NEWS
EIF3C
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:94.3 nTPM
HPA:94.3 nTPM
GTEx:98.8 nTPM
FANTOM5:31.2 Scaled Tags Per Million

CAUDATE - Antibody stainingi
Antibody HPA047097Antibody HPA049495Antibody HPA050112Antibody CAB034045
Glial cells LowMediumLowLow
Neuronal cells MediumMediumMediumMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 94.3
Sample id Sample description nTPM
Caudate nucleus
nTPM: 81.5
1857 Female, age 85, left hemisphere 92.4
2846 Female, age 79, unknown 88.1
2290 Female, age 72, unknown 86.3
1854 Male, age 80, left hemisphere 81.8
1781 Male, age 74, unknown 81.6
2481 Female, age 94, left hemisphere 79.8
2288 Male, age 75, left hemisphere 78.8
2289 Male, age 61, right hemisphere 63.3
Claustrum
nTPM: 88.7
2198 Male, age 80, both hemispheres 104.7
2491 Male, age 75, both hemispheres 91.8
1956 Male, age 74, unknown 91.4
2196 Female, age 79, unknown 90.3
2568 Male, age 61, both hemispheres 90.2
2292 Female, age 85, both hemispheres 88.8
2284 Female, age 91, both hemispheres 87.2
2645 Female, age 72, unknown 84.3
2392 Female, age 94, both hemispheres 69.7
Globus pallidus, externus
nTPM: 80.0
2646 Male, age 61, right hemisphere 87.3
2772 Female, age 79, unknown 85.8
2395 Male, age 75, both hemispheres 81.1
1996 Male, age 80, right hemisphere 78.0
2567 Female, age 72, unknown 67.9
Globus pallidus, internus
nTPM: 77.8
2287 Male, age 75, right hemisphere 96.3
2483 Female, age 94, right hemisphere 93.5
2778 Female, age 91, both hemispheres 77.2
2566 Female, age 72, unknown 72.6
1818 Male, age 74, unknown 72.3
2037 Male, age 80, right hemisphere 69.0
2111 Female, age 85, right hemisphere 63.7
Nucleus accumbens
nTPM: 82.5
1783 Male, age 74, unknown 95.8
2698 Female, age 72, unknown 95.7
1856 Female, age 91, right hemisphere 92.3
1806 Female, age 85, left hemisphere 89.9
2286 Male, age 75, left hemisphere 79.1
2391 Female, age 94, left hemisphere 72.0
2824 Male, age 61, right hemisphere 69.2
2732 Male, age 80, right hemisphere 65.7
Nucleus basalis of Meynert
nTPM: 79.6
2821 Male, age 75, both hemispheres 94.7
2569 Male, age 61, both hemispheres 84.0
2484 Female, age 94, left hemisphere 71.8
2393 Male, age 80, right hemisphere 67.8
Nucleus of the diagonal band
nTPM: 94.3
2195 Female, age 85, both hemispheres 109.6
2775 Male, age 80, right hemisphere 106.7
1812 Female, age 91, both hemispheres 93.8
1979 Male, age 74, unknown 81.2
2029 Male, age 61, right hemisphere 80.0
Olfactory tubercle
nTPM: 88.5
1998 Female, age 91, both hemispheres 93.6
1846 Male, age 80, right hemisphere 92.4
2487 Female, age 94, left hemisphere 91.1
2856 Male, age 75, right hemisphere 77.0
Putamen
nTPM: 80.8
1937 Female, age 91, right hemisphere 84.7
2482 Female, age 94, left hemisphere 84.1
1838 Male, age 80, right hemisphere 82.7
2647 Male, age 75, left hemisphere 82.3
2466 Female, age 79, unknown 82.2
1829 Male, age 74, unknown 75.5
2489 Female, age 72, unknown 73.9
Septal nuclei
nTPM: 89.9
1960 Male, age 74, unknown 123.6
2031 Female, age 72, unknown 102.7
2059 Female, age 85, both hemispheres 89.6
2629 Female, age 94, right hemisphere 87.8
2009 Female, age 91, both hemispheres 81.3
2199 Male, age 80, right hemisphere 74.7
2394 Male, age 61, left hemisphere 69.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 98.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 81.5
Samples: 246

Max nTPM: 189.1
Min nTPM: 26.4
Std nTPM: 28.1
Median nTPM: 77.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 189.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 180.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 180.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 169.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 152.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 144.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 143.7
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 139.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 134.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 133.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 132.5
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 98.8
Samples: 246

Max nTPM: 235.9
Min nTPM: 27.6
Std nTPM: 34.9
Median nTPM: 96.1
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 235.9
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 216.4
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 203.7
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 190.6
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 189.0
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 185.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 179.3
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 175.6
GTEX-T6MN-0011-R6A-SM-32QP8 50-59 years, male 172.4
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 171.5
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 170.9
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 78.1
Samples: 205

Max nTPM: 158.6
Min nTPM: 28.3
Std nTPM: 25.0
Median nTPM: 75.9
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 158.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 151.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 144.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 136.5
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 133.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 132.3
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 130.3
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 129.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 126.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 126.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 126.4
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 13.6
FF:10164-103B2 76 years, female 13.6
Globus pallidus
Scaled Tags Per Million: 22.2
FF:10175-103C4 60 years, female 34.7
FF:10161-103A8 76 years, female 9.7
Nucleus accumbens
Scaled Tags Per Million: 31.2
FF:10037-101F1 23-56 years, mixed 31.2
Putamen
Scaled Tags Per Million: 19.6
FF:10176-103C5 60 years, female 19.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.