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CLDN5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:93.8 nTPM
HPA:93.8 nTPM
GTEx:178.7 nTPM
FANTOM5:61.4 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:24.1 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB002607
Glial cells Not detected
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 93.8
Sample id Sample description nTPM
Hippocampus
nTPM: 89.1
2529 Female, age 94, left hemisphere 101.8
1911 Female, age 85, right hemisphere 93.5
1898 Male, age 80, left hemisphere 88.6
2621 Female, age 67, right hemisphere 86.5
2148 Female, age 91, left hemisphere 83.0
1855 Male, age 76, left hemisphere 81.5
Dentate gyrus
nTPM: 90.4
2530 Female, age 94, left hemisphere 118.0
2531 Female, age 67, both hemispheres 95.4
2010 Male, age 76, both hemispheres 91.1
2528 Male, age 74, both hemispheres 85.4
1927 Female, age 91, both hemispheres 78.3
2246 Female, age 85, both hemispheres 74.3
Entorhinal gyrus
nTPM: 82.4
1787 Male, age 76, left hemisphere 92.7
2686 Male, age 75, right hemisphere 89.5
2117 Female, age 91, right hemisphere 83.0
2764 Male, age 80, right hemisphere 78.4
2613 Female, age 94, left hemisphere 76.8
1938 Female, age 85, left hemisphere 74.1
Hippocampus, CA1
nTPM: 83.1
2527 Male, age 74, both hemispheres 90.0
2082 Female, age 91, right hemisphere 84.9
2045 Male, age 76, both hemispheres 81.2
2749 Male, age 80, left hemisphere 80.9
1873 Female, age 85, both hemispheres 78.4
Hippocampus, CA2
nTPM: 93.8
1963 Male, age 80, left hemisphere 106.0
2437 Female, age 94, left hemisphere 104.9
2249 Male, age 74, both hemispheres 97.7
2113 Female, age 91, right hemisphere 92.2
1892 Male, age 76, both hemispheres 82.7
1940 Female, age 85, left hemisphere 79.6
Hippocampus, CA3
nTPM: 93.4
2861 Female, age 67, both hemispheres 122.7
1867 Male, age 76, both hemispheres 98.0
2436 Male, age 74, both hemispheres 94.4
2137 Male, age 80, left hemisphere 83.0
1891 Female, age 85, both hemispheres 81.2
2620 Female, age 94, left hemisphere 80.8
Parahippocampal cortex
nTPM: 79.6
2018 Male, age 76, both hemispheres 104.0
2622 Female, age 67, right hemisphere 83.9
2245 Female, age 91, both hemispheres 80.1
1990 Female, age 91, right hemisphere 79.8
2692 Male, age 74, both hemispheres 77.9
2532 Female, age 72, left hemisphere 76.7
2250 Female, age 67, right hemisphere 74.9
1933 Female, age 85, both hemispheres 73.3
1850 Male, age 80, both hemispheres 72.8
2693 Female, age 94, both hemispheres 72.4
Perirhinal gyrus
nTPM: 74.9
1794 Male, age 80, right hemisphere 80.1
1841 Female, age 85, right hemisphere 77.1
2521 Female, age 94, right hemisphere 75.0
2848 Male, age 76, right hemisphere 72.1
1847 Female, age 91, left hemisphere 70.4
Subiculum
nTPM: 82.3
2042 Male, age 76, both hemispheres 93.8
2619 Male, age 74, both hemispheres 86.4
2438 Female, age 94, left hemisphere 79.2
1977 Female, age 85, both hemispheres 79.1
2729 Female, age 91, right hemisphere 78.4
1901 Male, age 80, both hemispheres 77.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 178.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 178.7
Samples: 197

Max nTPM: 926.9
Min nTPM: 29.8
Std nTPM: 116.7
Median nTPM: 152.5
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 926.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 589.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 482.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 475.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 473.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 422.2
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 419.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 413.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 407.9
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 405.8
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 392.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 61.4
FF:10153-102I9 76 years, female 74.7
FF:10169-103B7 60 years, female 48.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 15.3
Samples: 4

Max nTPM: 17.0
Min nTPM: 12.5
Sample A Female 17.0
Sample B Female 14.5
Sample C Male 17.0
Sample D Male 12.5
Entorhinal cortex
nTPM: 19.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 11.4
Sample A Female 17.2
Sample B Female 22.0
Sample C Male 27.4
Sample D Male 11.4
Subiculum
nTPM: 14.3
Samples: 4

Max nTPM: 16.3
Min nTPM: 10.8
Sample A Female 16.3
Sample B Female 10.8
Sample C Male 15.7
Sample D Male 14.5
Ventral hippocampus
nTPM: 20.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 14.9
Sample A Female 17.9
Sample B Female 14.9
Sample C Male 33.5
Sample D Male 14.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.1
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.9
Sample A Male 27.2
Sample B Male 24.5
Sample C Female 22.8
Sample D Female 21.9
Hippocampal formation
nTPM: 23.2
Samples: 4

Max nTPM: 24.0
Min nTPM: 21.8
Sample A Male 23.1
Sample B Male 24.0
Sample C Female 21.8
Sample D Female 23.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
79360268 Antisense, RP_071018_01_F08, Mouse strain C57BL/6J (56 days, male) 3.0
79490120 Antisense, RP_071018_01_F08, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.