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CLDN5
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:114.0 nTPM
HPA:114.0 nTPM
GTEx:206.3 nTPM
FANTOM5:84.4 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:18.9 nTPM
Allen mouse:3.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 114.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 97.5
2666 Male, age 74, left hemisphere 120.8
2019 Male, age 18, unknown 111.1
2828 Female, age 72, unknown 105.2
1870 Female, age 42, unknown 100.1
2411 Female, age 72, unknown 99.8
2586 Male, age 75, left hemisphere 97.1
1833 Male, age 53, unknown 92.6
1830 Male, age 51, unknown 91.7
1827 Male, age 72, unknown 83.1
2219 Male, age 76, both hemispheres 73.6
Dorsal raphe nucleus
nTPM: 94.9
2750 Male, age 76, both hemispheres 99.4
1828 Male, age 53, unknown 96.9
2298 Female, age 72, unknown 93.8
2016 Female, age 72, unknown 93.4
2047 Male, age 72, unknown 91.0
Inferior colliculus
nTPM: 96.4
2097 Female, age 72, unknown 109.2
1890 Male, age 53, unknown 100.4
1848 Female, age 42, unknown 97.1
2849 Male, age 72, unknown 78.8
Median raphe nucleus
nTPM: 86.1
2220 Male, age 76, midline 86.1
Pedunculopontine tegmental nucleus
nTPM: 91.8
2334 Male, age 80, both hemispheres 96.5
2338 Male, age 61, both hemispheres 95.7
1921 Female, age 85, both hemispheres 83.2
Periaquaductal grey, anterior
nTPM: 97.9
2502 Female, age 75, unknown 105.7
1795 Male, age 51, unknown 95.6
1947 Male, age 18, unknown 92.3
Periaquaductal grey, dorsal
nTPM: 83.0
2464 Female, age 72, unknown 94.1
1831 Male, age 72, unknown 92.0
1840 Male, age 53, unknown 76.7
2850 Male, age 76, both hemispheres 69.0
Periaquaductal grey, lateral
nTPM: 81.9
2053 Male, age 18, unknown 85.8
2272 Male, age 74, both hemispheres 85.1
2140 Male, age 76, both hemispheres 74.9
Pretectal area
nTPM: 87.4
1817 Female, age 42, unknown 105.5
2007 Male, age 72, unknown 105.1
2316 Male, age 76, right hemisphere 94.2
1815 Male, age 53, unknown 89.9
1816 Male, age 51, unknown 88.1
2667 Female, age 75, unknown 85.6
1944 Female, age 72, unknown 85.5
2224 Female, age 72, unknown 82.3
2825 Male, age 18, unknown 79.2
2273 Male, age 74, both hemispheres 76.2
2407 Male, age 75, both hemispheres 69.5
Red nucleus
nTPM: 114.0
2769 Male, age 72, unknown 129.7
2588 Male, age 74, left hemisphere 127.8
2227 Male, age 72, unknown 127.1
1954 Female, age 42, unknown 126.0
1904 Male, age 53, unknown 120.8
1821 Female, age 72, unknown 114.5
2503 Female, age 72, unknown 114.0
2785 Male, age 18, unknown 113.5
1865 Male, age 51, unknown 104.5
2823 Male, age 76, right hemisphere 103.7
2725 Female, age 75, unknown 93.2
2584 Male, age 75, left hemisphere 92.6
Substantia nigra
nTPM: 89.8
2665 Male, age 74, both hemispheres 124.0
1851 Male, age 51, unknown 97.5
1916 Female, age 42, unknown 93.7
1889 Female, age 72, unknown 93.4
2590 Female, age 75, unknown 86.3
2583 Male, age 75, right hemisphere 84.7
2699 Male, age 18, unknown 83.9
1941 Male, age 53, unknown 82.4
2409 Female, age 72, unknown 78.0
2241 Male, age 72, unknown 74.3
Superior colliculus
nTPM: 90.8
2668 Female, age 75, unknown 102.6
2087 Female, age 72, unknown 99.3
2587 Male, age 74, left hemisphere 99.3
1995 Male, age 72, unknown 94.8
2261 Male, age 18, unknown 90.2
1913 Female, age 42, unknown 88.7
1796 Male, age 53, unknown 87.5
1839 Male, age 51, unknown 87.5
1895 Male, age 76, right hemisphere 82.9
2664 Male, age 75, both hemispheres 75.0
Ventral tegmental area
nTPM: 94.3
1942 Male, age 51, unknown 97.2
2021 Male, age 53, unknown 96.9
2223 Female, age 72, unknown 95.5
2410 Female, age 72, unknown 93.6
2218 Male, age 76, both hemispheres 92.5
1915 Female, age 42, unknown 90.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 206.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 206.3
Samples: 139

Max nTPM: 906.3
Min nTPM: 46.3
Std nTPM: 142.1
Median nTPM: 167.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 906.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 876.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 709.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 638.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 582.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 504.6
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 498.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 471.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 464.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 410.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 408.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 84.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 84.4
FF:10158-103A5 76 years, female 84.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 31.0
Pig sample Sample description nTPM
Midbrain
nTPM: 26.0
Samples: 4

Max nTPM: 39.5
Min nTPM: 17.7
Sample A Female 39.5
Sample B Female 19.2
Sample C Male 27.4
Sample D Male 17.7
Periaqueductal gray
nTPM: 11.8
Samples: 3

Max nTPM: 12.7
Min nTPM: 10.1
Sample B Female 12.7
Sample C Male 12.7
Sample D Male 10.1
Substantia nigra
nTPM: 30.4
Samples: 4

Max nTPM: 44.1
Min nTPM: 18.9
Sample A Female 32.1
Sample B Female 44.1
Sample C Male 18.9
Sample D Male 26.6
Superior colliculi
nTPM: 31.0
Samples: 4

Max nTPM: 35.8
Min nTPM: 26.3
Sample A Female 35.8
Sample B Female 26.3
Sample C Male 30.6
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.9
Samples: 4

Max nTPM: 24.1
Min nTPM: 16.1
Sample A Male 24.1
Sample B Male 18.4
Sample C Female 16.1
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.0
79490120 Antisense, RP_071018_01_F08, Mouse strain C57BL/6J (56 days, male) 3.0
79360268 Antisense, RP_071018_01_F08, Mouse strain C57BL/6J (56 days, male) 2.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.