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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.7 nTPM
HPA:37.7 nTPM
GTEx:37.5 nTPM
FANTOM5:38.7 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 37.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.5
1833 Male, age 53, unknown 35.4
1870 Female, age 42, unknown 35.0
2219 Male, age 76, both hemispheres 34.9
2411 Female, age 72, unknown 34.9
1827 Male, age 72, unknown 33.0
2019 Male, age 18, unknown 33.0
2666 Male, age 74, left hemisphere 33.0
1830 Male, age 51, unknown 32.9
2828 Female, age 72, unknown 31.5
2586 Male, age 75, left hemisphere 31.0
Dorsal raphe nucleus
nTPM: 36.2
2750 Male, age 76, both hemispheres 37.8
2298 Female, age 72, unknown 37.6
2047 Male, age 72, unknown 36.7
1828 Male, age 53, unknown 35.0
2016 Female, age 72, unknown 33.8
Inferior colliculus
nTPM: 33.1
1890 Male, age 53, unknown 34.1
2097 Female, age 72, unknown 33.8
1848 Female, age 42, unknown 32.5
2849 Male, age 72, unknown 32.0
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Pedunculopontine tegmental nucleus
nTPM: 36.7
2334 Male, age 80, both hemispheres 38.2
1921 Female, age 85, both hemispheres 36.3
2338 Male, age 61, both hemispheres 35.4
Periaquaductal grey, anterior
nTPM: 33.0
1947 Male, age 18, unknown 34.2
1795 Male, age 51, unknown 32.7
2502 Female, age 75, unknown 32.1
Periaquaductal grey, dorsal
nTPM: 32.9
2850 Male, age 76, both hemispheres 33.7
1840 Male, age 53, unknown 33.5
2464 Female, age 72, unknown 32.7
1831 Male, age 72, unknown 31.7
Periaquaductal grey, lateral
nTPM: 32.3
2053 Male, age 18, unknown 32.7
2272 Male, age 74, both hemispheres 32.2
2140 Male, age 76, both hemispheres 32.0
Pretectal area
nTPM: 33.2
1817 Female, age 42, unknown 34.6
1944 Female, age 72, unknown 34.6
1815 Male, age 53, unknown 34.2
1816 Male, age 51, unknown 34.2
2007 Male, age 72, unknown 34.1
2224 Female, age 72, unknown 33.3
2273 Male, age 74, both hemispheres 32.6
2825 Male, age 18, unknown 32.2
2667 Female, age 75, unknown 32.0
2407 Male, age 75, both hemispheres 31.9
2316 Male, age 76, right hemisphere 31.4
Red nucleus
nTPM: 33.9
1821 Female, age 72, unknown 37.5
2725 Female, age 75, unknown 35.2
2503 Female, age 72, unknown 35.0
1865 Male, age 51, unknown 34.3
1904 Male, age 53, unknown 34.3
2227 Male, age 72, unknown 34.0
1954 Female, age 42, unknown 33.4
2584 Male, age 75, left hemisphere 33.1
2785 Male, age 18, unknown 33.0
2769 Male, age 72, unknown 32.6
2823 Male, age 76, right hemisphere 32.6
2588 Male, age 74, left hemisphere 32.3
Substantia nigra
nTPM: 37.3
2241 Male, age 72, unknown 44.6
2409 Female, age 72, unknown 41.5
1916 Female, age 42, unknown 41.0
2699 Male, age 18, unknown 36.9
1851 Male, age 51, unknown 36.7
1941 Male, age 53, unknown 36.7
1889 Female, age 72, unknown 35.3
2590 Female, age 75, unknown 35.1
2665 Male, age 74, both hemispheres 32.6
2583 Male, age 75, right hemisphere 32.2
Superior colliculus
nTPM: 32.7
2668 Female, age 75, unknown 34.9
2087 Female, age 72, unknown 33.6
2587 Male, age 74, left hemisphere 33.4
1839 Male, age 51, unknown 33.3
2261 Male, age 18, unknown 33.2
1895 Male, age 76, right hemisphere 32.7
1913 Female, age 42, unknown 32.7
1796 Male, age 53, unknown 31.8
1995 Male, age 72, unknown 30.8
2664 Male, age 75, both hemispheres 30.5
Ventral tegmental area
nTPM: 36.1
2410 Female, age 72, unknown 41.6
2218 Male, age 76, both hemispheres 37.4
1915 Female, age 42, unknown 37.3
1942 Male, age 51, unknown 34.3
2223 Female, age 72, unknown 33.7
2021 Male, age 53, unknown 32.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.5
Samples: 139

Max nTPM: 69.5
Min nTPM: 14.7
Std nTPM: 10.0
Median nTPM: 36.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 69.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 61.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 59.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 55.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 55.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 55.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 54.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 54.5
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 54.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 53.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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