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SNRNP35
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.0 nTPM
HPA:34.0 nTPM
GTEx:30.8 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:13.1 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.1
1833 Male, age 53, unknown 34.0
2666 Male, age 74, left hemisphere 34.0
1870 Female, age 42, unknown 33.4
2019 Male, age 18, unknown 33.3
1830 Male, age 51, unknown 33.2
2411 Female, age 72, unknown 33.2
2219 Male, age 76, both hemispheres 32.9
2586 Male, age 75, left hemisphere 32.8
1827 Male, age 72, unknown 32.7
2828 Female, age 72, unknown 31.7
Dorsal raphe nucleus
nTPM: 31.4
2750 Male, age 76, both hemispheres 32.6
2016 Female, age 72, unknown 31.5
1828 Male, age 53, unknown 31.4
2047 Male, age 72, unknown 31.3
2298 Female, age 72, unknown 30.1
Inferior colliculus
nTPM: 32.8
2849 Male, age 72, unknown 36.0
1890 Male, age 53, unknown 32.5
1848 Female, age 42, unknown 31.9
2097 Female, age 72, unknown 30.8
Median raphe nucleus
nTPM: 32.6
2220 Male, age 76, midline 32.6
Pedunculopontine tegmental nucleus
nTPM: 33.2
2338 Male, age 61, both hemispheres 34.3
2334 Male, age 80, both hemispheres 32.9
1921 Female, age 85, both hemispheres 32.2
Periaquaductal grey, anterior
nTPM: 31.3
1795 Male, age 51, unknown 31.8
1947 Male, age 18, unknown 31.3
2502 Female, age 75, unknown 30.9
Periaquaductal grey, dorsal
nTPM: 32.7
2850 Male, age 76, both hemispheres 34.2
2464 Female, age 72, unknown 32.8
1831 Male, age 72, unknown 32.3
1840 Male, age 53, unknown 31.6
Periaquaductal grey, lateral
nTPM: 32.2
2140 Male, age 76, both hemispheres 32.6
2053 Male, age 18, unknown 32.5
2272 Male, age 74, both hemispheres 31.5
Pretectal area
nTPM: 32.4
2407 Male, age 75, both hemispheres 34.4
2316 Male, age 76, right hemisphere 34.0
1817 Female, age 42, unknown 33.0
2007 Male, age 72, unknown 32.4
1815 Male, age 53, unknown 32.3
2825 Male, age 18, unknown 32.3
1944 Female, age 72, unknown 32.2
2667 Female, age 75, unknown 32.2
1816 Male, age 51, unknown 31.5
2273 Male, age 74, both hemispheres 31.3
2224 Female, age 72, unknown 30.6
Red nucleus
nTPM: 34.0
2725 Female, age 75, unknown 36.2
2823 Male, age 76, right hemisphere 35.5
2503 Female, age 72, unknown 34.8
1865 Male, age 51, unknown 34.5
2588 Male, age 74, left hemisphere 34.0
1904 Male, age 53, unknown 33.8
2584 Male, age 75, left hemisphere 33.8
2769 Male, age 72, unknown 33.5
2227 Male, age 72, unknown 33.2
1821 Female, age 72, unknown 32.9
1954 Female, age 42, unknown 32.9
2785 Male, age 18, unknown 32.8
Substantia nigra
nTPM: 32.1
2699 Male, age 18, unknown 34.4
2590 Female, age 75, unknown 32.8
1941 Male, age 53, unknown 32.5
1889 Female, age 72, unknown 32.2
2583 Male, age 75, right hemisphere 32.2
2665 Male, age 74, both hemispheres 32.0
1851 Male, age 51, unknown 31.6
2409 Female, age 72, unknown 31.4
1916 Female, age 42, unknown 31.0
2241 Male, age 72, unknown 30.4
Superior colliculus
nTPM: 32.5
1913 Female, age 42, unknown 35.0
1895 Male, age 76, right hemisphere 33.7
1995 Male, age 72, unknown 33.2
1796 Male, age 53, unknown 32.6
1839 Male, age 51, unknown 32.5
2587 Male, age 74, left hemisphere 32.5
2664 Male, age 75, both hemispheres 32.4
2087 Female, age 72, unknown 31.7
2261 Male, age 18, unknown 31.0
2668 Female, age 75, unknown 30.7
Ventral tegmental area
nTPM: 31.9
2218 Male, age 76, both hemispheres 32.5
1942 Male, age 51, unknown 32.0
2223 Female, age 72, unknown 32.0
2021 Male, age 53, unknown 31.8
1915 Female, age 42, unknown 31.7
2410 Female, age 72, unknown 31.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.8
Samples: 139

Max nTPM: 77.3
Min nTPM: 15.0
Std nTPM: 9.7
Median nTPM: 29.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 77.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 73.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 60.6
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 57.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 47.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 45.7
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 44.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 44.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 44.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 43.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.7
FF:10158-103A5 76 years, female 38.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Midbrain
nTPM: 8.0
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.8
Sample A Female 9.6
Sample B Female 7.7
Sample C Male 6.8
Sample D Male 7.9
Periaqueductal gray
nTPM: 7.8
Samples: 3

Max nTPM: 8.3
Min nTPM: 7.4
Sample B Female 7.4
Sample C Male 7.7
Sample D Male 8.3
Substantia nigra
nTPM: 8.2
Samples: 4

Max nTPM: 9.3
Min nTPM: 6.8
Sample A Female 8.9
Sample B Female 6.8
Sample C Male 7.6
Sample D Male 9.3
Superior colliculi
nTPM: 7.8
Samples: 4

Max nTPM: 9.6
Min nTPM: 5.6
Sample A Female 9.6
Sample B Female 5.6
Sample C Male 7.3
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 13.1
Samples: 4

Max nTPM: 13.3
Min nTPM: 12.7
Sample A Male 13.2
Sample B Male 12.7
Sample C Female 13.1
Sample D Female 13.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69444885 Antisense, RP_050414_04_G11, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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