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TM2D3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.7 nTPM
HPA:58.7 nTPM
GTEx:45.1 nTPM
FANTOM5:56.2 Scaled Tags Per Million
Pig:13.2 nTPM
Mouse:102.7 nTPM
Allen mouse:7.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 58.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
1827 Male, age 72, unknown 58.5
2411 Female, age 72, unknown 56.3
1870 Female, age 42, unknown 55.8
2828 Female, age 72, unknown 53.9
2666 Male, age 74, left hemisphere 53.2
2586 Male, age 75, left hemisphere 51.4
1833 Male, age 53, unknown 51.2
2219 Male, age 76, both hemispheres 51.2
2019 Male, age 18, unknown 50.7
1830 Male, age 51, unknown 50.1
Dorsal raphe nucleus
nTPM: 54.2
2298 Female, age 72, unknown 58.1
2750 Male, age 76, both hemispheres 54.8
2047 Male, age 72, unknown 54.5
1828 Male, age 53, unknown 52.1
2016 Female, age 72, unknown 51.4
Inferior colliculus
nTPM: 53.4
2097 Female, age 72, unknown 58.7
1890 Male, age 53, unknown 52.2
1848 Female, age 42, unknown 51.8
2849 Male, age 72, unknown 51.0
Median raphe nucleus
nTPM: 57.1
2220 Male, age 76, midline 57.1
Pedunculopontine tegmental nucleus
nTPM: 54.1
1921 Female, age 85, both hemispheres 55.7
2334 Male, age 80, both hemispheres 55.5
2338 Male, age 61, both hemispheres 51.1
Periaquaductal grey, anterior
nTPM: 58.7
1947 Male, age 18, unknown 62.2
1795 Male, age 51, unknown 59.4
2502 Female, age 75, unknown 54.4
Periaquaductal grey, dorsal
nTPM: 53.2
1840 Male, age 53, unknown 54.1
2850 Male, age 76, both hemispheres 53.1
1831 Male, age 72, unknown 53.0
2464 Female, age 72, unknown 52.7
Periaquaductal grey, lateral
nTPM: 53.5
2053 Male, age 18, unknown 55.2
2272 Male, age 74, both hemispheres 53.2
2140 Male, age 76, both hemispheres 52.1
Pretectal area
nTPM: 55.9
2224 Female, age 72, unknown 61.6
1816 Male, age 51, unknown 58.8
2007 Male, age 72, unknown 57.3
1944 Female, age 72, unknown 56.2
2825 Male, age 18, unknown 55.9
2667 Female, age 75, unknown 55.6
1817 Female, age 42, unknown 55.5
1815 Male, age 53, unknown 54.8
2273 Male, age 74, both hemispheres 53.5
2316 Male, age 76, right hemisphere 53.1
2407 Male, age 75, both hemispheres 52.8
Red nucleus
nTPM: 50.9
2725 Female, age 75, unknown 54.3
1821 Female, age 72, unknown 53.1
2588 Male, age 74, left hemisphere 52.1
1865 Male, age 51, unknown 50.6
2785 Male, age 18, unknown 50.6
1954 Female, age 42, unknown 50.5
2503 Female, age 72, unknown 50.5
2823 Male, age 76, right hemisphere 50.3
2584 Male, age 75, left hemisphere 50.0
1904 Male, age 53, unknown 49.8
2769 Male, age 72, unknown 49.6
2227 Male, age 72, unknown 49.3
Substantia nigra
nTPM: 53.0
1889 Female, age 72, unknown 55.9
2241 Male, age 72, unknown 55.2
1851 Male, age 51, unknown 54.8
1941 Male, age 53, unknown 54.4
1916 Female, age 42, unknown 54.3
2583 Male, age 75, right hemisphere 53.4
2590 Female, age 75, unknown 52.9
2665 Male, age 74, both hemispheres 50.8
2409 Female, age 72, unknown 49.1
2699 Male, age 18, unknown 48.9
Superior colliculus
nTPM: 53.2
1796 Male, age 53, unknown 56.8
2261 Male, age 18, unknown 56.6
1895 Male, age 76, right hemisphere 55.1
2087 Female, age 72, unknown 53.3
2587 Male, age 74, left hemisphere 53.0
2668 Female, age 75, unknown 52.5
1839 Male, age 51, unknown 52.2
1913 Female, age 42, unknown 51.4
1995 Male, age 72, unknown 50.7
2664 Male, age 75, both hemispheres 50.3
Ventral tegmental area
nTPM: 54.4
2021 Male, age 53, unknown 55.5
2410 Female, age 72, unknown 55.4
1915 Female, age 42, unknown 55.2
2218 Male, age 76, both hemispheres 53.9
1942 Male, age 51, unknown 53.6
2223 Female, age 72, unknown 52.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.1
Samples: 139

Max nTPM: 96.9
Min nTPM: 24.1
Std nTPM: 13.6
Median nTPM: 42.9
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 96.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 96.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 83.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 78.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 76.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 73.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 69.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 68.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 67.4
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 65.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 63.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.2
FF:10158-103A5 76 years, female 56.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.2
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.3
Sample A Female 13.1
Sample B Female 12.8
Sample C Male 11.3
Sample D Male 15.7
Periaqueductal gray
nTPM: 11.3
Samples: 3

Max nTPM: 12.2
Min nTPM: 10.5
Sample B Female 11.3
Sample C Male 12.2
Sample D Male 10.5
Substantia nigra
nTPM: 11.7
Samples: 4

Max nTPM: 16.7
Min nTPM: 8.4
Sample A Female 16.7
Sample B Female 10.6
Sample C Male 11.1
Sample D Male 8.4
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 18.1
Min nTPM: 11.5
Sample A Female 18.1
Sample B Female 11.6
Sample C Male 11.6
Sample D Male 11.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 102.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 102.7
Samples: 4

Max nTPM: 116.8
Min nTPM: 94.7
Sample A Male 103.2
Sample B Male 96.0
Sample C Female 94.7
Sample D Female 116.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.0
72713 Antisense, RP_040407_01_H02, Mouse strain C57BL/6J (56 days, male) 10.7
83167 Antisense, RP_040407_01_H02, Mouse strain C57BL/6J (56 days, male) 10.1
77620389 Antisense, RP_070205_01_E11, Mouse strain C57BL/6J (56 days, male) 3.3
77414123 Antisense, RP_070205_01_E11, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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