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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
RNA expressioni
Consensus:58.0 nTPM
HPA:58.0 nTPM
GTEx:39.7 nTPM
FANTOM5:45.0 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:107.6 nTPM
Allen mouse:0.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA003187
Glial cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.1
2481 Female, age 94, left hemisphere 58.0
2288 Male, age 75, left hemisphere 54.4
2846 Female, age 79, unknown 54.3
1854 Male, age 80, left hemisphere 53.5
1857 Female, age 85, left hemisphere 53.5
2290 Female, age 72, unknown 53.2
1781 Male, age 74, unknown 53.0
2289 Male, age 61, right hemisphere 53.0
Claustrum
nTPM: 53.1
2392 Female, age 94, both hemispheres 55.9
1956 Male, age 74, unknown 55.4
2491 Male, age 75, both hemispheres 54.2
2198 Male, age 80, both hemispheres 53.9
2196 Female, age 79, unknown 52.5
2284 Female, age 91, both hemispheres 52.5
2568 Male, age 61, both hemispheres 52.5
2645 Female, age 72, unknown 50.8
2292 Female, age 85, both hemispheres 49.8
Globus pallidus, externus
nTPM: 53.1
2772 Female, age 79, unknown 57.6
2395 Male, age 75, both hemispheres 53.5
1996 Male, age 80, right hemisphere 52.8
2646 Male, age 61, right hemisphere 51.2
2567 Female, age 72, unknown 50.3
Globus pallidus, internus
nTPM: 53.5
1818 Male, age 74, unknown 55.8
2287 Male, age 75, right hemisphere 55.0
2483 Female, age 94, right hemisphere 54.5
2037 Male, age 80, right hemisphere 54.3
2778 Female, age 91, both hemispheres 53.6
2566 Female, age 72, unknown 50.7
2111 Female, age 85, right hemisphere 50.2
Nucleus accumbens
nTPM: 53.7
2286 Male, age 75, left hemisphere 56.2
1856 Female, age 91, right hemisphere 55.3
2824 Male, age 61, right hemisphere 54.7
2391 Female, age 94, left hemisphere 53.9
2698 Female, age 72, unknown 52.8
1806 Female, age 85, left hemisphere 52.6
2732 Male, age 80, right hemisphere 52.2
1783 Male, age 74, unknown 51.8
Nucleus basalis of Meynert
nTPM: 53.4
2821 Male, age 75, both hemispheres 56.4
2393 Male, age 80, right hemisphere 53.6
2484 Female, age 94, left hemisphere 52.5
2569 Male, age 61, both hemispheres 50.9
Nucleus of the diagonal band
nTPM: 58.0
1812 Female, age 91, both hemispheres 60.6
2775 Male, age 80, right hemisphere 60.2
2029 Male, age 61, right hemisphere 57.8
2195 Female, age 85, both hemispheres 56.7
1979 Male, age 74, unknown 54.6
Olfactory tubercle
nTPM: 57.1
1998 Female, age 91, both hemispheres 59.3
1846 Male, age 80, right hemisphere 58.2
2856 Male, age 75, right hemisphere 56.6
2487 Female, age 94, left hemisphere 54.3
Putamen
nTPM: 53.2
2482 Female, age 94, left hemisphere 55.7
1838 Male, age 80, right hemisphere 55.1
1937 Female, age 91, right hemisphere 54.6
2466 Female, age 79, unknown 54.6
2647 Male, age 75, left hemisphere 51.8
1829 Male, age 74, unknown 51.5
2489 Female, age 72, unknown 49.4
Septal nuclei
nTPM: 56.9
2031 Female, age 72, unknown 60.7
1960 Male, age 74, unknown 60.5
2009 Female, age 91, both hemispheres 58.8
2629 Female, age 94, right hemisphere 56.5
2059 Female, age 85, both hemispheres 55.3
2199 Male, age 80, right hemisphere 54.2
2394 Male, age 61, left hemisphere 52.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 39.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 38.9
Samples: 246

Max nTPM: 83.2
Min nTPM: 21.6
Std nTPM: 9.2
Median nTPM: 37.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 83.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 78.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 72.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 69.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 69.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 63.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 56.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 55.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 55.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.7
Samples: 246

Max nTPM: 93.4
Min nTPM: 16.3
Std nTPM: 8.9
Median nTPM: 39.3
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 93.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 76.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 70.9
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 66.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 62.9
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 62.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 60.8
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 60.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 59.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 58.6
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 56.8
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Brain - Putamen (basal ganglia)
Average nTPM: 39.4
Samples: 205

Max nTPM: 65.3
Min nTPM: 20.3
Std nTPM: 8.7
Median nTPM: 37.8
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 65.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.5
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 62.3
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 62.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 62.0
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 61.6
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 57.2
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 56.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 56.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 55.7
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 54.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 45.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.8
FF:10164-103B2 76 years, female 25.8
Globus pallidus
Scaled Tags Per Million: 29.9
FF:10175-103C4 60 years, female 44.9
FF:10161-103A8 76 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 45.0
FF:10037-101F1 23-56 years, mixed 45.0
Putamen
Scaled Tags Per Million: 42.1
FF:10176-103C5 60 years, female 42.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 16.8
Pig sample Sample description nTPM
Caudate
nTPM: 15.6
Samples: 4

Max nTPM: 16.9
Min nTPM: 14.7
Sample A Female 14.7
Sample B Female 15.3
Sample C Male 16.9
Sample D Male 15.4
Putamen
nTPM: 16.8
Samples: 4

Max nTPM: 25.5
Min nTPM: 13.7
Sample A Female 14.1
Sample B Female 14.0
Sample C Male 25.5
Sample D Male 13.7
Septum
nTPM: 14.1
Samples: 4

Max nTPM: 14.5
Min nTPM: 13.6
Sample A Female 14.5
Sample B Female 13.6
Sample C Male 14.1
Sample D Male 14.1
Ventral pallidum
nTPM: 15.2
Samples: 4

Max nTPM: 17.3
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 16.7
Sample C Male 17.3
Sample D Male 13.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 107.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.9
Samples: 4

Max nTPM: 110.2
Min nTPM: 97.8
Sample A Male 110.2
Sample B Male 100.9
Sample C Female 97.8
Sample D Female 98.6
Septum
nTPM: 103.2
Samples: 4

Max nTPM: 113.7
Min nTPM: 93.8
Sample A Male 94.9
Sample B Male 113.7
Sample C Female 110.3
Sample D Female 93.8
Ventral forebrain
nTPM: 107.7
Samples: 4

Max nTPM: 116.4
Min nTPM: 103.6
Sample A Male 106.5
Sample B Male 104.1
Sample C Female 116.4
Sample D Female 103.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
71488353 Antisense, RP_050913_01_D11, Mouse strain C57BL/6J (56 days, male) 0.2
Pallidum
Expression energy: 0.4
71488353 Antisense, RP_050913_01_D11, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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