ABOUTMENU
HELP
NEWS
APOO
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:57.0 nTPM
HPA:57.0 nTPM
GTEx:45.9 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Pig:20.7 nTPM
Mouse:103.4 nTPM
Allen mouse:0.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 57.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.9
2019 Male, age 18, unknown 56.4
2411 Female, age 72, unknown 55.9
1827 Male, age 72, unknown 54.5
2219 Male, age 76, both hemispheres 54.0
1833 Male, age 53, unknown 53.9
1870 Female, age 42, unknown 53.7
2666 Male, age 74, left hemisphere 53.7
2828 Female, age 72, unknown 52.9
1830 Male, age 51, unknown 52.2
2586 Male, age 75, left hemisphere 51.7
Dorsal raphe nucleus
nTPM: 55.2
2298 Female, age 72, unknown 56.8
1828 Male, age 53, unknown 56.5
2047 Male, age 72, unknown 55.4
2016 Female, age 72, unknown 53.8
2750 Male, age 76, both hemispheres 53.4
Inferior colliculus
nTPM: 54.6
1848 Female, age 42, unknown 55.0
1890 Male, age 53, unknown 55.0
2097 Female, age 72, unknown 54.8
2849 Male, age 72, unknown 53.8
Median raphe nucleus
nTPM: 54.7
2220 Male, age 76, midline 54.7
Pedunculopontine tegmental nucleus
nTPM: 55.1
1921 Female, age 85, both hemispheres 55.9
2334 Male, age 80, both hemispheres 55.1
2338 Male, age 61, both hemispheres 54.1
Periaquaductal grey, anterior
nTPM: 53.2
1795 Male, age 51, unknown 53.7
1947 Male, age 18, unknown 53.6
2502 Female, age 75, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 54.2
2850 Male, age 76, both hemispheres 55.7
1840 Male, age 53, unknown 54.4
1831 Male, age 72, unknown 53.5
2464 Female, age 72, unknown 53.2
Periaquaductal grey, lateral
nTPM: 54.8
2272 Male, age 74, both hemispheres 58.3
2053 Male, age 18, unknown 53.3
2140 Male, age 76, both hemispheres 52.7
Pretectal area
nTPM: 55.8
2667 Female, age 75, unknown 58.2
1817 Female, age 42, unknown 58.0
2273 Male, age 74, both hemispheres 56.8
1944 Female, age 72, unknown 56.4
2007 Male, age 72, unknown 56.2
1816 Male, age 51, unknown 56.1
1815 Male, age 53, unknown 55.3
2224 Female, age 72, unknown 55.3
2407 Male, age 75, both hemispheres 54.5
2825 Male, age 18, unknown 54.1
2316 Male, age 76, right hemisphere 52.6
Red nucleus
nTPM: 54.9
1821 Female, age 72, unknown 58.5
2725 Female, age 75, unknown 57.8
2823 Male, age 76, right hemisphere 55.4
1865 Male, age 51, unknown 55.2
1954 Female, age 42, unknown 55.0
2769 Male, age 72, unknown 55.0
2227 Male, age 72, unknown 54.9
1904 Male, age 53, unknown 54.2
2503 Female, age 72, unknown 53.7
2785 Male, age 18, unknown 53.4
2584 Male, age 75, left hemisphere 53.3
2588 Male, age 74, left hemisphere 52.5
Substantia nigra
nTPM: 57.0
2241 Male, age 72, unknown 60.8
1916 Female, age 42, unknown 60.6
1851 Male, age 51, unknown 58.7
1941 Male, age 53, unknown 58.4
1889 Female, age 72, unknown 57.9
2699 Male, age 18, unknown 57.7
2665 Male, age 74, both hemispheres 55.3
2409 Female, age 72, unknown 54.4
2590 Female, age 75, unknown 53.2
2583 Male, age 75, right hemisphere 52.9
Superior colliculus
nTPM: 53.8
1895 Male, age 76, right hemisphere 56.5
2587 Male, age 74, left hemisphere 55.8
2087 Female, age 72, unknown 55.5
1796 Male, age 53, unknown 54.4
2261 Male, age 18, unknown 54.2
1839 Male, age 51, unknown 53.8
2668 Female, age 75, unknown 53.4
2664 Male, age 75, both hemispheres 52.2
1913 Female, age 42, unknown 51.4
1995 Male, age 72, unknown 51.2
Ventral tegmental area
nTPM: 55.7
2410 Female, age 72, unknown 58.6
2218 Male, age 76, both hemispheres 57.8
1915 Female, age 42, unknown 57.7
1942 Male, age 51, unknown 54.2
2223 Female, age 72, unknown 53.2
2021 Male, age 53, unknown 52.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 45.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 45.9
Samples: 139

Max nTPM: 100.6
Min nTPM: 20.9
Std nTPM: 13.3
Median nTPM: 44.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 100.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 81.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 77.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 74.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 72.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 71.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 71.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 68.2
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 66.8
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 65.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.8
FF:10158-103A5 76 years, female 18.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.7
Pig sample Sample description nTPM
Midbrain
nTPM: 15.5
Samples: 4

Max nTPM: 18.1
Min nTPM: 12.4
Sample A Female 15.5
Sample B Female 12.4
Sample C Male 18.1
Sample D Male 16.0
Periaqueductal gray
nTPM: 12.8
Samples: 3

Max nTPM: 14.0
Min nTPM: 11.0
Sample B Female 14.0
Sample C Male 13.4
Sample D Male 11.0
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 19.4
Min nTPM: 12.2
Sample A Female 19.4
Sample B Female 13.8
Sample C Male 16.7
Sample D Male 12.2
Superior colliculi
nTPM: 20.8
Samples: 4

Max nTPM: 26.1
Min nTPM: 17.4
Sample A Female 20.2
Sample B Female 19.3
Sample C Male 26.1
Sample D Male 17.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 103.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 103.4
Samples: 4

Max nTPM: 105.9
Min nTPM: 100.3
Sample A Male 104.2
Sample B Male 105.9
Sample C Female 100.3
Sample D Female 103.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
71488353 Antisense, RP_050913_01_D11, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.