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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.6 nTPM
HPA:47.6 nTPM
GTEx:23.7 nTPM
FANTOM5:28.8 Scaled Tags Per Million
Pig:1.6 nTPM
Mouse:1.5 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.6
1870 Female, age 42, unknown 49.6
2411 Female, age 72, unknown 49.0
2828 Female, age 72, unknown 49.0
1830 Male, age 51, unknown 48.0
2666 Male, age 74, left hemisphere 47.4
1833 Male, age 53, unknown 45.2
2019 Male, age 18, unknown 45.2
1827 Male, age 72, unknown 44.7
2586 Male, age 75, left hemisphere 43.8
2219 Male, age 76, both hemispheres 43.7
Dorsal raphe nucleus
nTPM: 46.5
1828 Male, age 53, unknown 47.5
2047 Male, age 72, unknown 47.4
2016 Female, age 72, unknown 46.7
2750 Male, age 76, both hemispheres 46.3
2298 Female, age 72, unknown 44.7
Inferior colliculus
nTPM: 44.1
1848 Female, age 42, unknown 45.0
2849 Male, age 72, unknown 44.1
2097 Female, age 72, unknown 44.0
1890 Male, age 53, unknown 43.4
Median raphe nucleus
nTPM: 46.9
2220 Male, age 76, midline 46.9
Pedunculopontine tegmental nucleus
nTPM: 46.1
2338 Male, age 61, both hemispheres 46.9
2334 Male, age 80, both hemispheres 46.3
1921 Female, age 85, both hemispheres 45.0
Periaquaductal grey, anterior
nTPM: 45.3
1947 Male, age 18, unknown 46.4
2502 Female, age 75, unknown 45.6
1795 Male, age 51, unknown 43.8
Periaquaductal grey, dorsal
nTPM: 43.9
2464 Female, age 72, unknown 44.9
2850 Male, age 76, both hemispheres 44.5
1840 Male, age 53, unknown 43.5
1831 Male, age 72, unknown 42.8
Periaquaductal grey, lateral
nTPM: 44.9
2272 Male, age 74, both hemispheres 45.7
2053 Male, age 18, unknown 45.1
2140 Male, age 76, both hemispheres 44.1
Pretectal area
nTPM: 44.8
2825 Male, age 18, unknown 47.0
2224 Female, age 72, unknown 46.3
2407 Male, age 75, both hemispheres 45.7
2316 Male, age 76, right hemisphere 45.1
2667 Female, age 75, unknown 45.0
2273 Male, age 74, both hemispheres 44.6
2007 Male, age 72, unknown 44.5
1815 Male, age 53, unknown 44.1
1816 Male, age 51, unknown 43.5
1817 Female, age 42, unknown 43.4
1944 Female, age 72, unknown 43.2
Red nucleus
nTPM: 46.2
2769 Male, age 72, unknown 48.9
2227 Male, age 72, unknown 48.7
2725 Female, age 75, unknown 47.3
1904 Male, age 53, unknown 46.8
2503 Female, age 72, unknown 46.8
2823 Male, age 76, right hemisphere 46.4
1954 Female, age 42, unknown 45.9
1821 Female, age 72, unknown 45.5
1865 Male, age 51, unknown 45.5
2584 Male, age 75, left hemisphere 45.0
2785 Male, age 18, unknown 44.3
2588 Male, age 74, left hemisphere 43.7
Substantia nigra
nTPM: 46.2
1941 Male, age 53, unknown 49.9
1916 Female, age 42, unknown 49.3
1851 Male, age 51, unknown 48.5
2409 Female, age 72, unknown 48.2
2699 Male, age 18, unknown 46.3
2665 Male, age 74, both hemispheres 45.2
2241 Male, age 72, unknown 44.2
1889 Female, age 72, unknown 43.8
2583 Male, age 75, right hemisphere 43.7
2590 Female, age 75, unknown 43.5
Superior colliculus
nTPM: 45.6
1913 Female, age 42, unknown 46.7
1839 Male, age 51, unknown 46.6
1895 Male, age 76, right hemisphere 46.5
2668 Female, age 75, unknown 46.5
2587 Male, age 74, left hemisphere 45.9
1995 Male, age 72, unknown 45.6
2087 Female, age 72, unknown 45.4
2261 Male, age 18, unknown 44.5
1796 Male, age 53, unknown 44.2
2664 Male, age 75, both hemispheres 44.0
Ventral tegmental area
nTPM: 47.6
2223 Female, age 72, unknown 49.0
2410 Female, age 72, unknown 48.7
1915 Female, age 42, unknown 47.9
2021 Male, age 53, unknown 47.6
1942 Male, age 51, unknown 46.3
2218 Male, age 76, both hemispheres 45.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.7
Samples: 139

Max nTPM: 55.6
Min nTPM: 7.8
Std nTPM: 9.1
Median nTPM: 22.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 55.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 52.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 52.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 51.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 51.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 41.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 38.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 38.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 38.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 28.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 28.8
FF:10158-103A5 76 years, female 28.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.6
Pig sample Sample description nTPM
Midbrain
nTPM: 1.4
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.1
Sample C Male 1.6
Sample D Male 1.6
Periaqueductal gray
nTPM: 1.2
Samples: 3

Max nTPM: 1.3
Min nTPM: 1.1
Sample B Female 1.1
Sample C Male 1.1
Sample D Male 1.3
Substantia nigra
nTPM: 1.4
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.9
Sample A Female 1.9
Sample B Female 1.6
Sample C Male 0.9
Sample D Male 1.0
Superior colliculi
nTPM: 1.6
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.4
Sample A Female 1.6
Sample B Female 1.7
Sample C Male 1.4
Sample D Male 1.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 1.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.3
Sample A Male 1.3
Sample B Male 1.3
Sample C Female 1.6
Sample D Female 1.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
79541442 Antisense, RP_071018_01_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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