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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.9 nTPM
HPA:42.9 nTPM
GTEx:34.0 nTPM
FANTOM5:104.3 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:10.9 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.7
2586 Male, age 75, left hemisphere 46.2
2828 Female, age 72, unknown 45.0
1833 Male, age 53, unknown 42.5
1830 Male, age 51, unknown 41.4
2666 Male, age 74, left hemisphere 40.1
1870 Female, age 42, unknown 39.4
1827 Male, age 72, unknown 37.0
2411 Female, age 72, unknown 34.1
2019 Male, age 18, unknown 31.6
2219 Male, age 76, both hemispheres 29.5
Dorsal raphe nucleus
nTPM: 33.7
2750 Male, age 76, both hemispheres 38.6
1828 Male, age 53, unknown 36.6
2016 Female, age 72, unknown 35.0
2047 Male, age 72, unknown 30.6
2298 Female, age 72, unknown 27.6
Inferior colliculus
nTPM: 37.8
2849 Male, age 72, unknown 45.0
1848 Female, age 42, unknown 40.0
1890 Male, age 53, unknown 34.6
2097 Female, age 72, unknown 31.7
Median raphe nucleus
nTPM: 41.6
2220 Male, age 76, midline 41.6
Pedunculopontine tegmental nucleus
nTPM: 41.3
2338 Male, age 61, both hemispheres 51.1
2334 Male, age 80, both hemispheres 44.4
1921 Female, age 85, both hemispheres 28.4
Periaquaductal grey, anterior
nTPM: 34.8
1795 Male, age 51, unknown 36.3
1947 Male, age 18, unknown 35.5
2502 Female, age 75, unknown 32.4
Periaquaductal grey, dorsal
nTPM: 38.2
2850 Male, age 76, both hemispheres 57.3
1831 Male, age 72, unknown 33.9
2464 Female, age 72, unknown 32.7
1840 Male, age 53, unknown 28.9
Periaquaductal grey, lateral
nTPM: 39.9
2140 Male, age 76, both hemispheres 43.9
2272 Male, age 74, both hemispheres 39.9
2053 Male, age 18, unknown 36.0
Pretectal area
nTPM: 34.3
2825 Male, age 18, unknown 43.9
2667 Female, age 75, unknown 38.6
2316 Male, age 76, right hemisphere 36.1
2273 Male, age 74, both hemispheres 34.9
2407 Male, age 75, both hemispheres 34.4
2007 Male, age 72, unknown 34.3
1816 Male, age 51, unknown 33.9
1815 Male, age 53, unknown 32.8
1817 Female, age 42, unknown 31.5
1944 Female, age 72, unknown 29.1
2224 Female, age 72, unknown 27.6
Red nucleus
nTPM: 42.9
2823 Male, age 76, right hemisphere 50.4
2769 Male, age 72, unknown 50.3
2584 Male, age 75, left hemisphere 48.7
1954 Female, age 42, unknown 47.6
1865 Male, age 51, unknown 42.8
2227 Male, age 72, unknown 42.8
1904 Male, age 53, unknown 40.9
2725 Female, age 75, unknown 40.2
2588 Male, age 74, left hemisphere 39.2
1821 Female, age 72, unknown 38.1
2503 Female, age 72, unknown 37.5
2785 Male, age 18, unknown 36.5
Substantia nigra
nTPM: 38.2
2699 Male, age 18, unknown 53.4
2665 Male, age 74, both hemispheres 44.9
2583 Male, age 75, right hemisphere 41.1
1916 Female, age 42, unknown 39.7
1941 Male, age 53, unknown 37.8
1851 Male, age 51, unknown 35.0
2590 Female, age 75, unknown 34.7
2409 Female, age 72, unknown 34.5
1889 Female, age 72, unknown 33.6
2241 Male, age 72, unknown 27.1
Superior colliculus
nTPM: 36.6
1995 Male, age 72, unknown 43.6
1796 Male, age 53, unknown 42.3
1913 Female, age 42, unknown 39.3
2668 Female, age 75, unknown 39.0
2664 Male, age 75, both hemispheres 38.4
2587 Male, age 74, left hemisphere 35.6
1839 Male, age 51, unknown 34.4
1895 Male, age 76, right hemisphere 31.7
2087 Female, age 72, unknown 31.0
2261 Male, age 18, unknown 30.8
Ventral tegmental area
nTPM: 38.3
2223 Female, age 72, unknown 40.8
2410 Female, age 72, unknown 40.6
2021 Male, age 53, unknown 39.5
2218 Male, age 76, both hemispheres 38.5
1942 Male, age 51, unknown 37.8
1915 Female, age 42, unknown 32.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.0
Samples: 139

Max nTPM: 94.6
Min nTPM: 12.5
Std nTPM: 13.3
Median nTPM: 31.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 94.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 78.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 67.1
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 66.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 64.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 63.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 63.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 58.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 57.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 55.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 104.3
FF:10158-103A5 76 years, female 104.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 36.7
Min nTPM: 18.1
Sample A Female 36.7
Sample B Female 22.8
Sample C Male 18.1
Sample D Male 20.0
Periaqueductal gray
nTPM: 22.6
Samples: 3

Max nTPM: 23.5
Min nTPM: 21.9
Sample B Female 22.3
Sample C Male 23.5
Sample D Male 21.9
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 30.0
Min nTPM: 23.0
Sample A Female 30.0
Sample B Female 23.0
Sample C Male 26.7
Sample D Male 28.2
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 30.8
Min nTPM: 18.7
Sample A Female 30.8
Sample B Female 18.7
Sample C Male 20.1
Sample D Male 26.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 9.7
Sample A Male 13.3
Sample B Male 9.7
Sample C Female 10.4
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69352908 Antisense, RP_050412_01_D04, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.