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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:13.7 nTPM
HPA:13.7 nTPM
GTEx:7.2 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Pig:3.1 nTPM
Mouse:11.7 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA053914
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 13.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.2
1781 Male, age 74, unknown 13.7
2481 Female, age 94, left hemisphere 13.7
2289 Male, age 61, right hemisphere 13.5
2290 Female, age 72, unknown 13.3
1854 Male, age 80, left hemisphere 13.1
1857 Female, age 85, left hemisphere 12.9
2846 Female, age 79, unknown 12.8
2288 Male, age 75, left hemisphere 12.7
Claustrum
nTPM: 13.7
2292 Female, age 85, both hemispheres 14.1
2491 Male, age 75, both hemispheres 14.1
2645 Female, age 72, unknown 14.1
2568 Male, age 61, both hemispheres 13.9
2284 Female, age 91, both hemispheres 13.7
2198 Male, age 80, both hemispheres 13.5
1956 Male, age 74, unknown 13.3
2392 Female, age 94, both hemispheres 13.1
2196 Female, age 79, unknown 13.0
Globus pallidus, externus
nTPM: 13.7
2646 Male, age 61, right hemisphere 14.5
1996 Male, age 80, right hemisphere 13.8
2567 Female, age 72, unknown 13.8
2772 Female, age 79, unknown 13.4
2395 Male, age 75, both hemispheres 12.9
Globus pallidus, internus
nTPM: 13.5
2483 Female, age 94, right hemisphere 14.3
2111 Female, age 85, right hemisphere 13.9
2566 Female, age 72, unknown 13.5
2778 Female, age 91, both hemispheres 13.5
2037 Male, age 80, right hemisphere 13.2
1818 Male, age 74, unknown 12.9
2287 Male, age 75, right hemisphere 12.8
Nucleus accumbens
nTPM: 12.9
2391 Female, age 94, left hemisphere 13.5
1783 Male, age 74, unknown 13.2
1806 Female, age 85, left hemisphere 13.1
2732 Male, age 80, right hemisphere 13.1
2824 Male, age 61, right hemisphere 12.7
2698 Female, age 72, unknown 12.6
1856 Female, age 91, right hemisphere 12.5
2286 Male, age 75, left hemisphere 12.5
Nucleus basalis of Meynert
nTPM: 13.2
2569 Male, age 61, both hemispheres 14.2
2821 Male, age 75, both hemispheres 13.1
2484 Female, age 94, left hemisphere 13.0
2393 Male, age 80, right hemisphere 12.6
Nucleus of the diagonal band
nTPM: 13.3
1979 Male, age 74, unknown 13.4
1812 Female, age 91, both hemispheres 13.3
2195 Female, age 85, both hemispheres 13.3
2775 Male, age 80, right hemisphere 13.2
2029 Male, age 61, right hemisphere 13.0
Olfactory tubercle
nTPM: 13.3
2856 Male, age 75, right hemisphere 13.9
1998 Female, age 91, both hemispheres 13.7
1846 Male, age 80, right hemisphere 12.9
2487 Female, age 94, left hemisphere 12.9
Putamen
nTPM: 13.4
2647 Male, age 75, left hemisphere 14.4
2489 Female, age 72, unknown 13.9
2482 Female, age 94, left hemisphere 13.8
1829 Male, age 74, unknown 13.0
1838 Male, age 80, right hemisphere 13.0
1937 Female, age 91, right hemisphere 12.9
2466 Female, age 79, unknown 12.9
Septal nuclei
nTPM: 13.1
2199 Male, age 80, right hemisphere 13.6
1960 Male, age 74, unknown 13.4
2031 Female, age 72, unknown 13.3
2059 Female, age 85, both hemispheres 13.2
2629 Female, age 94, right hemisphere 13.1
2009 Female, age 91, both hemispheres 13.0
2394 Male, age 61, left hemisphere 12.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 11.3
Min nTPM: 3.6
Std nTPM: 1.4
Median nTPM: 6.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 11.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 11.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 11.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 11.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 10.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 10.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 10.2
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 9.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 9.6
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 9.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 9.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.1
Samples: 246

Max nTPM: 14.6
Min nTPM: 2.6
Std nTPM: 1.6
Median nTPM: 7.0
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 14.6
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 13.6
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 12.1
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 11.8
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 11.5
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 11.0
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 10.8
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 10.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 10.3
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 10.3
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 10.3
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Brain - Putamen (basal ganglia)
Average nTPM: 7.2
Samples: 205

Max nTPM: 15.2
Min nTPM: 3.4
Std nTPM: 1.7
Median nTPM: 7.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 15.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 13.2
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 12.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 12.0
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 11.6
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 11.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 11.1
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 10.4
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 10.3
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 10.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 10.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.9
FF:10164-103B2 76 years, female 16.9
Globus pallidus
Scaled Tags Per Million: 22.9
FF:10161-103A8 76 years, female 23.8
FF:10175-103C4 60 years, female 22.1
Nucleus accumbens
Scaled Tags Per Million: 13.2
FF:10037-101F1 23-56 years, mixed 13.2
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.1
Pig sample Sample description nTPM
Caudate
nTPM: 2.8
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.0
Sample A Female 2.0
Sample B Female 3.4
Sample C Male 3.3
Sample D Male 2.6
Putamen
nTPM: 3.1
Samples: 4

Max nTPM: 3.3
Min nTPM: 2.8
Sample A Female 2.9
Sample B Female 3.2
Sample C Male 3.3
Sample D Male 2.8
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.6
Min nTPM: 2.4
Sample A Female 2.9
Sample B Female 3.2
Sample C Male 3.6
Sample D Male 2.4
Ventral pallidum
nTPM: 3.0
Samples: 4

Max nTPM: 3.9
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 3.9
Sample C Male 3.8
Sample D Male 2.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 11.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 11.0
Samples: 4

Max nTPM: 11.8
Min nTPM: 9.7
Sample A Male 11.3
Sample B Male 11.8
Sample C Female 11.3
Sample D Female 9.7
Septum
nTPM: 11.7
Samples: 4

Max nTPM: 13.2
Min nTPM: 10.7
Sample A Male 13.2
Sample B Male 10.7
Sample C Female 11.7
Sample D Female 11.3
Ventral forebrain
nTPM: 11.6
Samples: 4

Max nTPM: 13.0
Min nTPM: 10.5
Sample A Male 13.0
Sample B Male 11.3
Sample C Female 10.5
Sample D Female 11.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
1979 Antisense, RP_040604_01_E02, Mouse strain C57BL/6J (56 days, male) 0.1
1978 Antisense, RP_040604_01_E02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
1979 Antisense, RP_040604_01_E02, Mouse strain C57BL/6J (56 days, male) 0.1
1978 Antisense, RP_040604_01_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.