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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:56.0 nTPM
HPA:56.0 nTPM
GTEx:41.2 nTPM
FANTOM5:10.5 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:5.8 nTPM
Allen mouse:1.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA045069Antibody CAB012961
Glial cells MediumMedium
Neuronal cells MediumMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 56.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 51.8
1781 Male, age 74, unknown 54.5
2290 Female, age 72, unknown 54.5
1854 Male, age 80, left hemisphere 54.4
1857 Female, age 85, left hemisphere 53.9
2846 Female, age 79, unknown 51.8
2481 Female, age 94, left hemisphere 49.0
2289 Male, age 61, right hemisphere 48.3
2288 Male, age 75, left hemisphere 48.0
Claustrum
nTPM: 56.0
2645 Female, age 72, unknown 67.5
2284 Female, age 91, both hemispheres 57.2
2568 Male, age 61, both hemispheres 57.2
2491 Male, age 75, both hemispheres 57.1
1956 Male, age 74, unknown 54.9
2198 Male, age 80, both hemispheres 54.9
2196 Female, age 79, unknown 53.2
2392 Female, age 94, both hemispheres 52.3
2292 Female, age 85, both hemispheres 49.9
Globus pallidus, externus
nTPM: 46.4
2646 Male, age 61, right hemisphere 48.3
2567 Female, age 72, unknown 47.6
2395 Male, age 75, both hemispheres 45.6
1996 Male, age 80, right hemisphere 45.4
2772 Female, age 79, unknown 44.8
Globus pallidus, internus
nTPM: 44.7
2483 Female, age 94, right hemisphere 49.2
2037 Male, age 80, right hemisphere 45.3
2566 Female, age 72, unknown 44.2
2111 Female, age 85, right hemisphere 44.1
1818 Male, age 74, unknown 43.9
2287 Male, age 75, right hemisphere 43.3
2778 Female, age 91, both hemispheres 43.0
Nucleus accumbens
nTPM: 50.1
1783 Male, age 74, unknown 55.3
1806 Female, age 85, left hemisphere 54.2
1856 Female, age 91, right hemisphere 52.0
2824 Male, age 61, right hemisphere 50.1
2286 Male, age 75, left hemisphere 49.3
2732 Male, age 80, right hemisphere 47.4
2698 Female, age 72, unknown 47.0
2391 Female, age 94, left hemisphere 45.4
Nucleus basalis of Meynert
nTPM: 49.4
2393 Male, age 80, right hemisphere 51.4
2484 Female, age 94, left hemisphere 50.7
2569 Male, age 61, both hemispheres 48.8
2821 Male, age 75, both hemispheres 46.9
Nucleus of the diagonal band
nTPM: 52.9
2775 Male, age 80, right hemisphere 56.8
2029 Male, age 61, right hemisphere 56.0
1812 Female, age 91, both hemispheres 53.2
2195 Female, age 85, both hemispheres 52.2
1979 Male, age 74, unknown 46.1
Olfactory tubercle
nTPM: 55.5
1998 Female, age 91, both hemispheres 59.3
2856 Male, age 75, right hemisphere 55.4
2487 Female, age 94, left hemisphere 55.0
1846 Male, age 80, right hemisphere 52.1
Putamen
nTPM: 52.9
2466 Female, age 79, unknown 55.5
1838 Male, age 80, right hemisphere 54.1
2647 Male, age 75, left hemisphere 53.9
2489 Female, age 72, unknown 53.6
1829 Male, age 74, unknown 52.5
1937 Female, age 91, right hemisphere 51.5
2482 Female, age 94, left hemisphere 48.9
Septal nuclei
nTPM: 53.0
1960 Male, age 74, unknown 60.4
2031 Female, age 72, unknown 58.2
2059 Female, age 85, both hemispheres 54.6
2009 Female, age 91, both hemispheres 52.8
2629 Female, age 94, right hemisphere 49.6
2394 Male, age 61, left hemisphere 49.3
2199 Male, age 80, right hemisphere 46.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 41.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.0
Samples: 246

Max nTPM: 75.4
Min nTPM: 15.4
Std nTPM: 9.9
Median nTPM: 39.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 75.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 63.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 63.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 62.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 62.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 62.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 61.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 61.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 60.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 59.8
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 59.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.0
Samples: 246

Max nTPM: 82.3
Min nTPM: 8.8
Std nTPM: 11.1
Median nTPM: 39.0
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 82.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 82.3
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 70.2
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 63.3
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 63.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 63.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 60.9
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 60.3
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 59.9
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 59.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 59.1
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Brain - Putamen (basal ganglia)
Average nTPM: 41.2
Samples: 205

Max nTPM: 70.9
Min nTPM: 11.2
Std nTPM: 9.8
Median nTPM: 40.3
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 70.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 66.1
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 63.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 62.2
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 61.3
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 61.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 61.0
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 60.8
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 59.8
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 59.5
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 59.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 7.3
FF:10164-103B2 76 years, female 7.3
Globus pallidus
Scaled Tags Per Million: 4.4
FF:10175-103C4 60 years, female 4.7
FF:10161-103A8 76 years, female 4.1
Nucleus accumbens
Scaled Tags Per Million: 9.4
FF:10037-101F1 23-56 years, mixed 9.4
Putamen
Scaled Tags Per Million: 10.5
FF:10176-103C5 60 years, female 10.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Caudate
nTPM: 10.3
Samples: 4

Max nTPM: 12.7
Min nTPM: 7.3
Sample A Female 7.3
Sample B Female 12.7
Sample C Male 11.3
Sample D Male 9.9
Putamen
nTPM: 8.4
Samples: 4

Max nTPM: 10.3
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 9.7
Sample C Male 8.2
Sample D Male 10.3
Septum
nTPM: 6.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 4.0
Sample A Female 6.7
Sample B Female 6.8
Sample C Male 7.6
Sample D Male 4.0
Ventral pallidum
nTPM: 8.6
Samples: 4

Max nTPM: 11.5
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 8.8
Sample C Male 11.5
Sample D Male 7.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.8
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 3.6
Samples: 4

Max nTPM: 5.6
Min nTPM: 2.2
Sample A Male 2.2
Sample B Male 2.6
Sample C Female 5.6
Sample D Female 3.9
Septum
nTPM: 4.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 4.1
Sample A Male 6.2
Sample B Male 4.8
Sample C Female 4.1
Sample D Female 4.1
Ventral forebrain
nTPM: 5.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.3
Sample A Male 6.4
Sample B Male 5.3
Sample C Female 5.6
Sample D Female 6.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
71724871 Antisense, RP_050921_03_F03, Mouse strain C57BL/6J (56 days, male) 0.9
74357574 Antisense, RP_050921_03_F03, Mouse strain C57BL/6J (56 days, male) 0.4
Pallidum
Expression energy: 1.0
71724871 Antisense, RP_050921_03_F03, Mouse strain C57BL/6J (56 days, male) 1.0
74357574 Antisense, RP_050921_03_F03, Mouse strain C57BL/6J (56 days, male) 0.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.